Strain identifier
BacDive ID: 132492
Type strain: 
Species: Nocardioides massiliensis
Strain Designation: GD13
Strain history: <- G. Dubourg, Timone Hospital, Marseille, France; GD13
NCBI tax ID(s): 1325935 (species)
General
@ref: 24281
BacDive-ID: 132492
DSM-Number: 28216
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Nocardioides massiliensis GD13 is a mesophilic bacterium that was isolated from human feces, 62-year old man with Guillain-Barré syndrome.
NCBI tax id
- NCBI tax id: 1325935
- Matching level: species
strain history
- @ref: 24281
- history: <- G. Dubourg, Timone Hospital, Marseille, France; GD13
doi: 10.13145/bacdive132492.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Nocardioidaceae
- genus: Nocardioides
- species: Nocardioides massiliensis
- full scientific name: Nocardioides massiliensis Dubourg et al. 2016
@ref: 24281
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardioidaceae
genus: Nocardioides
species: Nocardioides massiliensis
full scientific name: Nocardioides massiliensis Dubourg et al. 2016
strain designation: GD13
type strain: yes
Culture and growth conditions
culture medium
- @ref: 24281
- name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
- growth: yes
- link: https://mediadive.dsmz.de/medium/693
- composition: Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
culture temp
- @ref: 24281
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 24281
- sample type: human feces, 62-year old man with Guillain-Barré syndrome
- geographic location: Marseille
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | #Male |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Safety information
risk assessment
- @ref: 24281
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24281
- description: Nocardioides sp. GD13 partial 16S rRNA gene, isolate GD13
- accession: HF952922
- length: 1345
- database: ena
- NCBI tax ID: 1325935
Genome sequences
- @ref: 66792
- description: Nocardioides massiliensis DSM 28216
- accession: 2923494085
- assembly level: draft
- database: img
- NCBI tax ID: 1325935
GC content
- @ref: 24281
- GC-content: 71.0
- method: sequence analysis
External links
@ref: 24281
culture collection no.: DSM 28216, CSUR P894
straininfo link
- @ref: 90822
- straininfo: 406771
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24281 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28216 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28216) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 90822 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406771.1 |