Strain identifier

BacDive ID: 132464

Type strain: No

Species: Izhakiella capsodis

Strain Designation: N8PO1

Strain history: <- M. Halpern, Department of Biology and Environment, University of Haifa, Tivon, Israel; N8PO1 <- M. Samuni-Blank and S. Laviad, Tivon

NCBI tax ID(s): 1367852 (species)

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General

@ref: 24253

BacDive-ID: 132464

DSM-Number: 29292

keywords: 16S sequence, Bacteria, mesophilic

description: Izhakiella capsodis N8PO1 is a mesophilic bacterium that was isolated from mirid bug captured on a Asphodelus aestivus plant.

NCBI tax id

  • NCBI tax id: 1367852
  • Matching level: species

strain history

  • @ref: 24253
  • history: <- M. Halpern, Department of Biology and Environment, University of Haifa, Tivon, Israel; N8PO1 <- M. Samuni-Blank and S. Laviad, Tivon

doi: 10.13145/bacdive132464.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Izhakiella
  • species: Izhakiella capsodis
  • full scientific name: Izhakiella capsodis Aizenberg-Gershtein et al. 2016

@ref: 24253

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Izhakiella

species: Izhakiella capsodis

full scientific name: Izhakiella capsodis Aizenberg-Gershtein et al. 2016

strain designation: N8PO1

type strain: no

Morphology

multimedia

  • @ref: 24253
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_29292.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
24253R2A MEDIUM (DSMZ Medium 830)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium830.pdf
24253NUTRIENT AGAR (DSMZ Medium 1)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1.pdf
24253YPGA (DSMZ Medium 1015)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1015.pdf
24253TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
24253positivegrowth28mesophilic
24253positivegrowth37mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose-fermentation
6836827613amygdalin+fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine+degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
24253--+---+--+-+++-+--+--

Isolation, sampling and environmental information

isolation

  • @ref: 24253
  • sample type: mirid bug (Capsodes infuscatus) captured on a Asphodelus aestivus plant
  • host species: Capsodes infuscatus;Asphodelus aestivus
  • geographic location: Ramat Hanadiv near Zichron Ya'acov (32.55565° N 34.94828° E)
  • country: Israel
  • origin.country: ISR
  • continent: Asia
  • latitude: 32.5556
  • longitude: 34.9483

isolation source categories

Cat1Cat2Cat3
#Host#Arthropoda#Insecta
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host#Plants#Shrub (Scrub)

taxonmaps

  • @ref: 69479
  • File name: preview.99_71048.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_3552;97_38361;98_49830;99_71048&stattab=map
  • Last taxonomy: Izhakiella capsodis subclade
  • 16S sequence: KF436673
  • Sequence Identity:
  • Total samples: 1742
  • soil counts: 17
  • aquatic counts: 106
  • animal counts: 1371
  • plant counts: 248

Safety information

risk assessment

  • @ref: 24253
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24253
  • description: Izhakiella capsodis strain N8PO1 16S ribosomal RNA gene, partial sequence
  • accession: KF436673
  • length: 1509
  • database: ena
  • NCBI tax ID: 1367852

External links

@ref: 24253

culture collection no.: DSM 29292, LMG 28431

straininfo link

  • @ref: 90801
  • straininfo: 397355

literature

  • topic: Phylogeny
  • Pubmed-ID: 26755199
  • title: Izhakiella capsodis gen. nov., sp. nov., in the family Enterobacteriaceae, isolated from the mirid bug Capsodes infuscatus.
  • authors: Aizenberg-Gershtein Y, Laviad S, Samuni-Blank M, Halpern M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000886
  • year: 2016

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24253Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29292Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29292)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
90801Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397355.1