Strain identifier
BacDive ID: 132458
Type strain:
Species: Brotonthovivens ammoniilytica
Strain Designation: Sanger 109, Sanger_109
Strain history: <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; Sanger_109
NCBI tax ID(s): 2049040 (species)
General
@ref: 24247
BacDive-ID: 132458
DSM-Number: 102148
keywords: genome sequence, Bacteria, mesophilic
description: Brotonthovivens ammoniilytica Sanger 109 is a mesophilic bacterium that was isolated from faeces from healthy human.
NCBI tax id
- NCBI tax id: 2049040
- Matching level: species
strain history
- @ref: 24247
- history: <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; Sanger_109
doi: 10.13145/bacdive132458.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Lachnospiraceae
- genus: Brotonthovivens
- species: Brotonthovivens ammoniilytica
- full scientific name: Brotonthovivens ammoniilytica Hitch et al. 2022
@ref: 24247
domain: Bacteria
phylum: Bacillota
class: Clostridia
order: Eubacteriales
family: Lachnospiraceae
genus: Brotonthovivens
species: Brotonthovivens ammoniilytica
full scientific name: Brotonthovivens ammoniilytica Hitch et al. 2022
strain designation: Sanger 109, Sanger_109
type strain: yes
Culture and growth conditions
culture medium
- @ref: 24247
- name: YCFA-MEDIUM (MODIFIED) (DSMZ Medium 1611)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1611
- composition: Name: YCFA MEDIUM (modified) (DSMZ Medium 1611) Composition: Casitone 10.0 g/l Glucose 5.0 g/l NaHCO3 4.0 g/l Yeast extract 2.5 g/l Acetic acid 1.78695 g/l L-Cysteine HCl 1.0 g/l NaCl 0.9 g/l Propionic acid 0.62559 g/l KH2PO4 0.45 g/l K2HPO4 0.45 g/l CaCl2 x 2 H2O 0.09 g/l n-Valeric acid 0.08451 g/l iso-Valeric acid 0.0837899 g/l iso-Butyric acid 0.07695 g/l MgSO4 x 7 H2O 0.045 g/l Hemin 0.01 g/l Resazurin 0.001 g/l Pyridoxine hydrochloride 0.0001 g/l Nicotinic acid 5e-05 g/l Thiamine-HCl x 2 H2O 5e-05 g/l Riboflavin 5e-05 g/l D-Calcium pantothenate 5e-05 g/l p-Aminobenzoic acid 5e-05 g/l Lipoic acid 5e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Vitamin B12 1e-06 g/l Distilled water
culture temp
- @ref: 24247
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 24247
- sample type: faeces from healthy human
- geographic location: Cambridgeshire
- country: United Kingdom
- origin.country: GBR
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Sequence information
Genome sequences
- @ref: 66792
- description: Brotonthovivens ammoniilytica Sanger_109
- accession: GCA_025566885
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 2981725
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 94.019 | no |
flagellated | no | 96.318 | no |
gram-positive | yes | 73.144 | no |
anaerobic | yes | 99.726 | no |
aerobic | no | 98.39 | no |
halophile | no | 83.465 | no |
spore-forming | no | 70.853 | no |
glucose-ferment | yes | 51.951 | no |
thermophile | no | 93.853 | yes |
glucose-util | yes | 87.748 | no |
External links
@ref: 24247
culture collection no.: DSM 102148, JCM 34815
straininfo link
- @ref: 90795
- straininfo: 407203
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
24247 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102148 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102148) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
90795 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407203.1 |