Strain identifier

BacDive ID: 132434

Type strain: Yes

Species: Mariniluteicoccus endophyticus

Strain history: W.-J. Li YIM 2617.

NCBI tax ID(s): 1642469 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 24223

BacDive-ID: 132434

DSM-Number: 28728

keywords: 16S sequence, Bacteria, obligate anaerobe, Gram-positive, coccus-shaped

description: Mariniluteicoccus endophyticus DSM 28728 is an obligate anaerobe, Gram-positive, coccus-shaped bacterium that was isolated from surface-sterilized root of Ocimum basilicum.

NCBI tax id

  • NCBI tax id: 1642469
  • Matching level: species

strain history

@refhistory
24223<- W.-J. Li, YIM; YIM 2617 <- B. Liu
67770W.-J. Li YIM 2617.

doi: 10.13145/bacdive132434.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Propionibacteriaceae
  • genus: Mariniluteicoccus
  • species: Mariniluteicoccus endophyticus
  • full scientific name: Mariniluteicoccus endophyticus Liu et al. 2016

@ref: 24223

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Propionibacteriaceae

genus: Mariniluteicoccus

species: Mariniluteicoccus endophyticus

full scientific name: Mariniluteicoccus endophyticus Liu et al. 2016

type strain: yes

Morphology

cell morphology

  • @ref: 43727
  • gram stain: positive
  • cell length: 0.7-1.1 µm
  • cell shape: coccus-shaped
  • motility: no

Culture and growth conditions

culture medium

  • @ref: 24223
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
43727positivegrowth10-42
43727positiveoptimum28-32mesophilic
24223positivegrowth28mesophilic
67770positivegrowth37mesophilic

culture pH

@refabilitytypepHPH range
43727positivegrowth6-9alkaliphile
43727positiveoptimum7-8

Physiology and metabolism

oxygen tolerance

  • @ref: 43727
  • oxygen tolerance: obligate anaerobe

halophily

@refsaltgrowthtested relationconcentration
43727NaClpositivegrowth0-4.5 %(w/v)
43727NaClpositiveoptimum0-1 %(w/v)

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
43727168082-dehydro-D-gluconate-builds acid from
43727581435-dehydro-D-gluconate-builds acid from
4372715963ribitol-builds acid from
4372727613amygdalin-builds acid from
4372722599arabinose-builds acid from
4372722605arabinitol-builds acid from
4372712936D-galactose-builds acid from
4372762318D-lyxose-builds acid from
4372716899D-mannitol-builds acid from
4372716988D-ribose-builds acid from
4372716443D-tagatose-builds acid from
4372716813galactitol-builds acid from
4372717113erythritol-builds acid from
4372733984fucose-builds acid from
4372724265gluconate-builds acid from
4372717268myo-inositol-builds acid from
4372715443inulin-builds acid from
4372762345L-rhamnose-builds acid from
4372717266L-sorbose-builds acid from
4372717716lactose-builds acid from
4372728053melibiose-builds acid from
4372743943methyl alpha-D-mannoside-builds acid from
4372774863methyl beta-D-xylopyranoside-builds acid from
43727506227N-acetylglucosamine-builds acid from
4372716634raffinose-builds acid from
4372730911sorbitol-builds acid from
4372717151xylitol-builds acid from
4372718222xylose-builds acid from
4372727689decanoate-carbon source
4372716947citrate-carbon source
4372717108D-arabinose-carbon source
4372716899D-mannitol-carbon source
4372717716lactose-carbon source
4372725094lysine-carbon source
43727506227N-acetylglucosamine-carbon source
4372718401phenylacetate-carbon source
4372730911sorbitol-carbon source
4372727922sorbose-carbon source
4372717151xylitol-carbon source
4372718222xylose-carbon source
43727casein-hydrolysis
437275291gelatin-hydrolysis
4372728017starch-hydrolysis
4372727689decanoate-nitrogen source
4372716947citrate-nitrogen source
4372717108D-arabinose-nitrogen source
4372716899D-mannitol-nitrogen source
4372717716lactose-nitrogen source
4372725094lysine-nitrogen source
43727506227N-acetylglucosamine-nitrogen source
4372718401phenylacetate-nitrogen source
4372730911sorbitol-nitrogen source
4372727922sorbose-nitrogen source
4372717151xylitol-nitrogen source
4372718222xylose-nitrogen source
4372718305arbutin+builds acid from
4372717057cellobiose+builds acid from
4372715824D-fructose+builds acid from
4372717634D-glucose+builds acid from
4372716024D-mannose+builds acid from
437274853esculin+builds acid from
4372728066gentiobiose+builds acid from
4372717754glycerol+builds acid from
4372728087glycogen+builds acid from
4372717306maltose+builds acid from
43727320061methyl alpha-D-glucopyranoside+builds acid from
4372717814salicin+builds acid from
4372728017starch+builds acid from
4372717992sucrose+builds acid from
4372727082trehalose+builds acid from
4372732528turanose+builds acid from
4372717128adipate+carbon source
4372717057cellobiose+carbon source
4372715824D-fructose+carbon source
4372712936D-galactose+carbon source
4372717634D-glucose+carbon source
4372716024D-mannose+carbon source
4372724265gluconate+carbon source
4372717754glycerol+carbon source
4372716977L-alanine+carbon source
4372716467L-arginine+carbon source
4372729991L-aspartate+carbon source
4372762345L-rhamnose+carbon source
4372725115malate+carbon source
4372717306maltose+carbon source
4372726271proline+carbon source
4372716634raffinose+carbon source
4372728017starch+carbon source
4372717992sucrose+carbon source
4372727082trehalose+carbon source
4372753424tween 20+hydrolysis
4372753423tween 40+hydrolysis
4372753425tween 60+hydrolysis
4372753426tween 80+hydrolysis
4372717128adipate+nitrogen source
4372717057cellobiose+nitrogen source
4372715824D-fructose+nitrogen source
4372717634D-glucose+nitrogen source
4372716024D-mannose+nitrogen source
4372724265gluconate+nitrogen source
4372717754glycerol+nitrogen source
4372716977L-alanine+nitrogen source
4372716467L-arginine+nitrogen source
4372729991L-aspartate+nitrogen source
4372762345L-rhamnose+nitrogen source
4372725115malate+nitrogen source
4372717306maltose+nitrogen source
4372726271proline+nitrogen source
4372716634raffinose+nitrogen source
4372728017starch+nitrogen source
4372717992sucrose+nitrogen source
4372727082trehalose+nitrogen source
4372717632nitrate+reduction

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
437272637amikacinyesyes30 µg (disc)
437273515cefuroximeyesyes30 µg (disc)
4372717698chloramphenicolyesyes30 µg (disc)
43727100241ciprofloxacinyesyes5 µg (disc)
4372748923erythromycinyesyes15 µg (disc)
43727100246norfloxacinyesyes10 µg (disc)
4372728368novobiocinyesyes30 µg (disc)
437278232piperacillinyesyes100 µg (disc)
4372727902tetracyclineyesyes30 µg (disc)
4372728001vancomycinyesyes30 µg (disc)
4372717334penicillinyesyes10 Unit (disc)
4372717833gentamicinyesyes10 µg (disc)
437277809oxacillinyesyes1 µg (disc)
437279332sulfamethoxazoleyesyes23.75 µg (disc)
4372745924trimethoprimyesyes1.25 µg (disc)
4372786455optochinyesyes5 µg (disc)
437278309polymyxin byesyes300 Unit (disc)

metabolite production

@refChebi-IDmetaboliteproduction
4372716136hydrogen sulfideno
4372735581indoleno

enzymes

@refvalueactivityec
43727cytochrome oxidase+1.9.3.1
43727catalase+1.11.1.6
43727alkaline phosphatase+3.1.3.1
43727esterase (C 4)+
43727esterase Lipase (C 8)+
43727leucine arylamidase+3.4.11.1
43727valine arylamidase+
43727cystine arylamidase+3.4.11.3
43727trypsin+3.4.21.4
43727alpha-chymotrypsin+3.4.21.1
43727acid phosphatase+3.1.3.2
43727naphthol-AS-BI-phosphohydrolase+
43727alpha-glucosidase+3.2.1.20
43727beta-glucosidase+3.2.1.21
43727lipase (C 14)-
43727alpha-galactosidase-3.2.1.22
43727beta-galactosidase-3.2.1.23
43727beta-glucuronidase-3.2.1.31
43727N-acetyl-beta-glucosaminidase-3.2.1.52
43727alpha-mannosidase-3.2.1.24
43727beta-D-fucosidase-3.2.1.38

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentlatitudelongitude
24223surface-sterilized root of Ocimum basilicumOcimum basilicumYunnan Province, Shilin County, Impression Tobacco farm (103° 21' 51.8'' E 24° 54' 43.6'' N)ChinaCHNAsia24.9121103.364
43727A root sample of Ocimum basilicum collected from Impression Tobacco farmShilin County, Yunnan ProvinceChinaCHNAsia24.912103.364
67770Root of Ocimum basilicum from Impression Tobacco farm in Shilin CityOcimum basilicumChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root (Rhizome)
#Host Body-Site#Plant#Sterilized plant part

taxonmaps

  • @ref: 69479
  • File name: preview.99_77518.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_72;96_32762;97_41492;98_54152;99_77518&stattab=map
  • Last taxonomy: Mariniluteicoccus endophyticus subclade
  • 16S sequence: KP793091
  • Sequence Identity:
  • Total samples: 229
  • soil counts: 5
  • aquatic counts: 7
  • animal counts: 212
  • plant counts: 5

Safety information

risk assessment

  • @ref: 24223
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24223
  • description: Mariniluteicoccus endophyticus strain YIM 2617 16S ribosomal RNA gene, partial sequence
  • accession: KP793091
  • length: 1508
  • database: ena
  • NCBI tax ID: 1642469

GC content

@refGC-contentmethod
2422366.6high performance liquid chromatography (HPLC)
6777066.4high performance liquid chromatography (HPLC)

External links

@ref: 24223

culture collection no.: DSM 28728, JCM 30097, KCTC 29482, YIM 2617

straininfo link

  • @ref: 90773
  • straininfo: 405852

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny26742722Mariniluteicoccus endophyticus sp. nov., an endophytic actinobacterium isolated from root of Ocimum basilicum.Liu BB, Chen W, Chu X, Yang Y, Salam N, Hu WY, Gao R, Duan YQ, Li WJInt J Syst Evol Microbiol10.1099/ijsem.0.0008802016
Phylogeny31169487Desertihabitans aurantiacus gen. nov., sp. nov., a novel member of the family Propionibacteriaceae.Sun Y, Wang H, Zhang T, Liu WH, Liu HY, Yu LY, Zhang YQInt J Syst Evol Microbiol10.1099/ijsem.0.0035192019Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, *Desert Climate, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Glycolipids/chemistry, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Propionibacteriaceae/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24223Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28728Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28728)
43727Bing-Bing Liu, Wei Chen, Xiao Chu, Ying Yang, Nimaichand Salam, Wei-Yao Hu, Rui Gao, Yan-Qing Duan, Wen-Jun LiMariniluteicoccus endophyticus sp. nov., an endophytic actinobacterium isolated from root of Ocimum basilicum10.1099/ijsem.0.000880IJSEM 66: 1306-1310 201626742722
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
90773Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405852.1