Strain identifier
BacDive ID: 132434
Type strain:
Species: Mariniluteicoccus endophyticus
Strain history: W.-J. Li YIM 2617.
NCBI tax ID(s): 1642469 (species)
General
@ref: 24223
BacDive-ID: 132434
DSM-Number: 28728
keywords: 16S sequence, Bacteria, obligate anaerobe, Gram-positive, coccus-shaped
description: Mariniluteicoccus endophyticus DSM 28728 is an obligate anaerobe, Gram-positive, coccus-shaped bacterium that was isolated from surface-sterilized root of Ocimum basilicum.
NCBI tax id
- NCBI tax id: 1642469
- Matching level: species
strain history
@ref | history |
---|---|
24223 | <- W.-J. Li, YIM; YIM 2617 <- B. Liu |
67770 | W.-J. Li YIM 2617. |
doi: 10.13145/bacdive132434.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Propionibacteriaceae
- genus: Mariniluteicoccus
- species: Mariniluteicoccus endophyticus
- full scientific name: Mariniluteicoccus endophyticus Liu et al. 2016
@ref: 24223
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Propionibacteriaceae
genus: Mariniluteicoccus
species: Mariniluteicoccus endophyticus
full scientific name: Mariniluteicoccus endophyticus Liu et al. 2016
type strain: yes
Morphology
cell morphology
- @ref: 43727
- gram stain: positive
- cell length: 0.7-1.1 µm
- cell shape: coccus-shaped
- motility: no
Culture and growth conditions
culture medium
- @ref: 24223
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
43727 | positive | growth | 10-42 | |
43727 | positive | optimum | 28-32 | mesophilic |
24223 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
43727 | positive | growth | 6-9 | alkaliphile |
43727 | positive | optimum | 7-8 |
Physiology and metabolism
oxygen tolerance
- @ref: 43727
- oxygen tolerance: obligate anaerobe
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
43727 | NaCl | positive | growth | 0-4.5 %(w/v) |
43727 | NaCl | positive | optimum | 0-1 %(w/v) |
observation
- @ref: 67770
- observation: quinones: MK-9(H4)
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
43727 | 16808 | 2-dehydro-D-gluconate | - | builds acid from |
43727 | 58143 | 5-dehydro-D-gluconate | - | builds acid from |
43727 | 15963 | ribitol | - | builds acid from |
43727 | 27613 | amygdalin | - | builds acid from |
43727 | 22599 | arabinose | - | builds acid from |
43727 | 22605 | arabinitol | - | builds acid from |
43727 | 12936 | D-galactose | - | builds acid from |
43727 | 62318 | D-lyxose | - | builds acid from |
43727 | 16899 | D-mannitol | - | builds acid from |
43727 | 16988 | D-ribose | - | builds acid from |
43727 | 16443 | D-tagatose | - | builds acid from |
43727 | 16813 | galactitol | - | builds acid from |
43727 | 17113 | erythritol | - | builds acid from |
43727 | 33984 | fucose | - | builds acid from |
43727 | 24265 | gluconate | - | builds acid from |
43727 | 17268 | myo-inositol | - | builds acid from |
43727 | 15443 | inulin | - | builds acid from |
43727 | 62345 | L-rhamnose | - | builds acid from |
43727 | 17266 | L-sorbose | - | builds acid from |
43727 | 17716 | lactose | - | builds acid from |
43727 | 28053 | melibiose | - | builds acid from |
43727 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
43727 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
43727 | 506227 | N-acetylglucosamine | - | builds acid from |
43727 | 16634 | raffinose | - | builds acid from |
43727 | 30911 | sorbitol | - | builds acid from |
43727 | 17151 | xylitol | - | builds acid from |
43727 | 18222 | xylose | - | builds acid from |
43727 | 27689 | decanoate | - | carbon source |
43727 | 16947 | citrate | - | carbon source |
43727 | 17108 | D-arabinose | - | carbon source |
43727 | 16899 | D-mannitol | - | carbon source |
43727 | 17716 | lactose | - | carbon source |
43727 | 25094 | lysine | - | carbon source |
43727 | 506227 | N-acetylglucosamine | - | carbon source |
43727 | 18401 | phenylacetate | - | carbon source |
43727 | 30911 | sorbitol | - | carbon source |
43727 | 27922 | sorbose | - | carbon source |
43727 | 17151 | xylitol | - | carbon source |
43727 | 18222 | xylose | - | carbon source |
43727 | casein | - | hydrolysis | |
43727 | 5291 | gelatin | - | hydrolysis |
43727 | 28017 | starch | - | hydrolysis |
43727 | 27689 | decanoate | - | nitrogen source |
43727 | 16947 | citrate | - | nitrogen source |
43727 | 17108 | D-arabinose | - | nitrogen source |
43727 | 16899 | D-mannitol | - | nitrogen source |
43727 | 17716 | lactose | - | nitrogen source |
43727 | 25094 | lysine | - | nitrogen source |
43727 | 506227 | N-acetylglucosamine | - | nitrogen source |
43727 | 18401 | phenylacetate | - | nitrogen source |
43727 | 30911 | sorbitol | - | nitrogen source |
43727 | 27922 | sorbose | - | nitrogen source |
43727 | 17151 | xylitol | - | nitrogen source |
43727 | 18222 | xylose | - | nitrogen source |
43727 | 18305 | arbutin | + | builds acid from |
43727 | 17057 | cellobiose | + | builds acid from |
43727 | 15824 | D-fructose | + | builds acid from |
43727 | 17634 | D-glucose | + | builds acid from |
43727 | 16024 | D-mannose | + | builds acid from |
43727 | 4853 | esculin | + | builds acid from |
43727 | 28066 | gentiobiose | + | builds acid from |
43727 | 17754 | glycerol | + | builds acid from |
43727 | 28087 | glycogen | + | builds acid from |
43727 | 17306 | maltose | + | builds acid from |
43727 | 320061 | methyl alpha-D-glucopyranoside | + | builds acid from |
43727 | 17814 | salicin | + | builds acid from |
43727 | 28017 | starch | + | builds acid from |
43727 | 17992 | sucrose | + | builds acid from |
43727 | 27082 | trehalose | + | builds acid from |
43727 | 32528 | turanose | + | builds acid from |
43727 | 17128 | adipate | + | carbon source |
43727 | 17057 | cellobiose | + | carbon source |
43727 | 15824 | D-fructose | + | carbon source |
43727 | 12936 | D-galactose | + | carbon source |
43727 | 17634 | D-glucose | + | carbon source |
43727 | 16024 | D-mannose | + | carbon source |
43727 | 24265 | gluconate | + | carbon source |
43727 | 17754 | glycerol | + | carbon source |
43727 | 16977 | L-alanine | + | carbon source |
43727 | 16467 | L-arginine | + | carbon source |
43727 | 29991 | L-aspartate | + | carbon source |
43727 | 62345 | L-rhamnose | + | carbon source |
43727 | 25115 | malate | + | carbon source |
43727 | 17306 | maltose | + | carbon source |
43727 | 26271 | proline | + | carbon source |
43727 | 16634 | raffinose | + | carbon source |
43727 | 28017 | starch | + | carbon source |
43727 | 17992 | sucrose | + | carbon source |
43727 | 27082 | trehalose | + | carbon source |
43727 | 53424 | tween 20 | + | hydrolysis |
43727 | 53423 | tween 40 | + | hydrolysis |
43727 | 53425 | tween 60 | + | hydrolysis |
43727 | 53426 | tween 80 | + | hydrolysis |
43727 | 17128 | adipate | + | nitrogen source |
43727 | 17057 | cellobiose | + | nitrogen source |
43727 | 15824 | D-fructose | + | nitrogen source |
43727 | 17634 | D-glucose | + | nitrogen source |
43727 | 16024 | D-mannose | + | nitrogen source |
43727 | 24265 | gluconate | + | nitrogen source |
43727 | 17754 | glycerol | + | nitrogen source |
43727 | 16977 | L-alanine | + | nitrogen source |
43727 | 16467 | L-arginine | + | nitrogen source |
43727 | 29991 | L-aspartate | + | nitrogen source |
43727 | 62345 | L-rhamnose | + | nitrogen source |
43727 | 25115 | malate | + | nitrogen source |
43727 | 17306 | maltose | + | nitrogen source |
43727 | 26271 | proline | + | nitrogen source |
43727 | 16634 | raffinose | + | nitrogen source |
43727 | 28017 | starch | + | nitrogen source |
43727 | 17992 | sucrose | + | nitrogen source |
43727 | 27082 | trehalose | + | nitrogen source |
43727 | 17632 | nitrate | + | reduction |
antibiotic resistance
@ref | ChEBI | metabolite | is antibiotic | is sensitive | sensitivity conc. | is resistant | resistance conc. |
---|---|---|---|---|---|---|---|
43727 | 2637 | amikacin | yes | yes | 30 µg (disc) | ||
43727 | 3515 | cefuroxime | yes | yes | 30 µg (disc) | ||
43727 | 17698 | chloramphenicol | yes | yes | 30 µg (disc) | ||
43727 | 100241 | ciprofloxacin | yes | yes | 5 µg (disc) | ||
43727 | 48923 | erythromycin | yes | yes | 15 µg (disc) | ||
43727 | 100246 | norfloxacin | yes | yes | 10 µg (disc) | ||
43727 | 28368 | novobiocin | yes | yes | 30 µg (disc) | ||
43727 | 8232 | piperacillin | yes | yes | 100 µg (disc) | ||
43727 | 27902 | tetracycline | yes | yes | 30 µg (disc) | ||
43727 | 28001 | vancomycin | yes | yes | 30 µg (disc) | ||
43727 | 17334 | penicillin | yes | yes | 10 Unit (disc) | ||
43727 | 17833 | gentamicin | yes | yes | 10 µg (disc) | ||
43727 | 7809 | oxacillin | yes | yes | 1 µg (disc) | ||
43727 | 9332 | sulfamethoxazole | yes | yes | 23.75 µg (disc) | ||
43727 | 45924 | trimethoprim | yes | yes | 1.25 µg (disc) | ||
43727 | 86455 | optochin | yes | yes | 5 µg (disc) | ||
43727 | 8309 | polymyxin b | yes | yes | 300 Unit (disc) |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
43727 | 16136 | hydrogen sulfide | no |
43727 | 35581 | indole | no |
enzymes
@ref | value | activity | ec |
---|---|---|---|
43727 | cytochrome oxidase | + | 1.9.3.1 |
43727 | catalase | + | 1.11.1.6 |
43727 | alkaline phosphatase | + | 3.1.3.1 |
43727 | esterase (C 4) | + | |
43727 | esterase Lipase (C 8) | + | |
43727 | leucine arylamidase | + | 3.4.11.1 |
43727 | valine arylamidase | + | |
43727 | cystine arylamidase | + | 3.4.11.3 |
43727 | trypsin | + | 3.4.21.4 |
43727 | alpha-chymotrypsin | + | 3.4.21.1 |
43727 | acid phosphatase | + | 3.1.3.2 |
43727 | naphthol-AS-BI-phosphohydrolase | + | |
43727 | alpha-glucosidase | + | 3.2.1.20 |
43727 | beta-glucosidase | + | 3.2.1.21 |
43727 | lipase (C 14) | - | |
43727 | alpha-galactosidase | - | 3.2.1.22 |
43727 | beta-galactosidase | - | 3.2.1.23 |
43727 | beta-glucuronidase | - | 3.2.1.31 |
43727 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
43727 | alpha-mannosidase | - | 3.2.1.24 |
43727 | beta-D-fucosidase | - | 3.2.1.38 |
Isolation, sampling and environmental information
isolation
@ref | sample type | host species | geographic location | country | origin.country | continent | latitude | longitude |
---|---|---|---|---|---|---|---|---|
24223 | surface-sterilized root of Ocimum basilicum | Ocimum basilicum | Yunnan Province, Shilin County, Impression Tobacco farm (103° 21' 51.8'' E 24° 54' 43.6'' N) | China | CHN | Asia | 24.9121 | 103.364 |
43727 | A root sample of Ocimum basilicum collected from Impression Tobacco farm | Shilin County, Yunnan Province | China | CHN | Asia | 24.912 | 103.364 | |
67770 | Root of Ocimum basilicum from Impression Tobacco farm in Shilin City | Ocimum basilicum | China | CHN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
#Host Body-Site | #Plant | #Root (Rhizome) |
#Host Body-Site | #Plant | #Sterilized plant part |
taxonmaps
- @ref: 69479
- File name: preview.99_77518.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_72;96_32762;97_41492;98_54152;99_77518&stattab=map
- Last taxonomy: Mariniluteicoccus endophyticus subclade
- 16S sequence: KP793091
- Sequence Identity:
- Total samples: 229
- soil counts: 5
- aquatic counts: 7
- animal counts: 212
- plant counts: 5
Safety information
risk assessment
- @ref: 24223
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24223
- description: Mariniluteicoccus endophyticus strain YIM 2617 16S ribosomal RNA gene, partial sequence
- accession: KP793091
- length: 1508
- database: ena
- NCBI tax ID: 1642469
GC content
@ref | GC-content | method |
---|---|---|
24223 | 66.6 | high performance liquid chromatography (HPLC) |
67770 | 66.4 | high performance liquid chromatography (HPLC) |
External links
@ref: 24223
culture collection no.: DSM 28728, JCM 30097, KCTC 29482, YIM 2617
straininfo link
- @ref: 90773
- straininfo: 405852
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 26742722 | Mariniluteicoccus endophyticus sp. nov., an endophytic actinobacterium isolated from root of Ocimum basilicum. | Liu BB, Chen W, Chu X, Yang Y, Salam N, Hu WY, Gao R, Duan YQ, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000880 | 2016 | ||
Phylogeny | 31169487 | Desertihabitans aurantiacus gen. nov., sp. nov., a novel member of the family Propionibacteriaceae. | Sun Y, Wang H, Zhang T, Liu WH, Liu HY, Yu LY, Zhang YQ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003519 | 2019 | Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, *Desert Climate, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Glycolipids/chemistry, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Propionibacteriaceae/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
@id | authors | title | doi/url | catalogue | journal | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
24223 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28728 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28728) | |||
43727 | Bing-Bing Liu, Wei Chen, Xiao Chu, Ying Yang, Nimaichand Salam, Wei-Yao Hu, Rui Gao, Yan-Qing Duan, Wen-Jun Li | Mariniluteicoccus endophyticus sp. nov., an endophytic actinobacterium isolated from root of Ocimum basilicum | 10.1099/ijsem.0.000880 | IJSEM 66: 1306-1310 2016 | 26742722 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
90773 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405852.1 |