Strain identifier
BacDive ID: 132426
Type strain:
Species: Croceibacterium mercuriale
Strain Designation: Coronado
Strain history: <- D. Coil, Univ. of California, USA
NCBI tax ID(s): 1572751 (species)
General
@ref: 24215
BacDive-ID: 132426
DSM-Number: 29971
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Croceibacterium mercuriale Coronado is a mesophilic bacterium that was isolated from stadium seat.
NCBI tax id
- NCBI tax id: 1572751
- Matching level: species
strain history
- @ref: 24215
- history: <- D. Coil, Univ. of California, USA
doi: 10.13145/bacdive132426.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Sphingomonadales
- family: Erythrobacteraceae
- genus: Croceibacterium
- species: Croceibacterium mercuriale
- full scientific name: Croceibacterium mercuriale (Coil et al. 2016) Liu et al. 2019
synonyms
- @ref: 20215
- synonym: Porphyrobacter mercurialis
@ref: 24215
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Sphingomonadales
family: Erythrobacteraceae
genus: Croceibacterium
species: Croceibacterium mercuriale
full scientific name: Croceibacterium mercuriale (Coil et al. 2016) Liu et al. 2019
strain designation: Coronado
type strain: yes
Culture and growth conditions
culture medium
- @ref: 24215
- name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)
- growth: yes
- link: https://mediadive.dsmz.de/medium/381
- composition: Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water
culture temp
- @ref: 24215
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 24215
- sample type: stadium seat
- geographic location: California, Coronado, Coronado High School, Niedermeyer Field
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Engineered
- Cat2: #Industrial
- Cat3: #Engineered product
taxonmaps
- @ref: 69479
- File name: preview.99_2373.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_20;96_1278;97_1518;98_1848;99_2373&stattab=map
- Last taxonomy: Croceibacterium
- 16S sequence: KP122961
- Sequence Identity:
- Total samples: 18164
- soil counts: 4926
- aquatic counts: 3187
- animal counts: 7197
- plant counts: 2854
Safety information
risk assessment
- @ref: 24215
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24215
- description: Porphyrobacter mercurialis strain Coronado 16S ribosomal RNA gene, partial sequence
- accession: KP122961
- length: 1482
- database: ena
- NCBI tax ID: 1572751
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Croceibacterium mercuriale Coronado | GCA_000802385 | contig | ncbi | 1572751 |
66792 | Croceibacterium mercuriale Coronado | 2639762748 | draft | img | 1572751 |
GC content
- @ref: 24215
- GC-content: 67.3
- method: sequence analysis
External links
@ref: 24215
culture collection no.: DSM 29971, LMG 28700
straininfo link
- @ref: 90765
- straininfo: 405917
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | topic2 |
---|---|---|---|---|---|---|---|
Genetics | 26586867 | Draft Genome Sequence of Porphyrobacter mercurialis (sp. nov.) Strain Coronado. | Coil DA, Eisen JA | Genome Announc | 10.1128/genomeA.00856-15 | 2015 | Phylogeny |
Phylogeny | 26587357 | Porphyrobacter mercurialis sp. nov., isolated from a stadium seat and emended description of the genus Porphyrobacter. | Coil DA, Flanagan JC, Stump A, Alexiev A, Lang JM, Eisen JA | PeerJ | 10.7717/peerj.1400 | 2015 |
Reference
@id | authors | title | doi/url | catalogue | journal | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
24215 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29971 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29971) | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
90765 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405917.1 |