Strain identifier

BacDive ID: 132426

Type strain: Yes

Species: Croceibacterium mercuriale

Strain Designation: Coronado

Strain history: <- D. Coil, Univ. of California, USA

NCBI tax ID(s): 1572751 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 24215

BacDive-ID: 132426

DSM-Number: 29971

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Croceibacterium mercuriale Coronado is a mesophilic bacterium that was isolated from stadium seat.

NCBI tax id

  • NCBI tax id: 1572751
  • Matching level: species

strain history

  • @ref: 24215
  • history: <- D. Coil, Univ. of California, USA

doi: 10.13145/bacdive132426.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Erythrobacteraceae
  • genus: Croceibacterium
  • species: Croceibacterium mercuriale
  • full scientific name: Croceibacterium mercuriale (Coil et al. 2016) Liu et al. 2019
  • synonyms

    • @ref: 20215
    • synonym: Porphyrobacter mercurialis

@ref: 24215

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Sphingomonadales

family: Erythrobacteraceae

genus: Croceibacterium

species: Croceibacterium mercuriale

full scientific name: Croceibacterium mercuriale (Coil et al. 2016) Liu et al. 2019

strain designation: Coronado

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 24215
  • name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/381
  • composition: Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water

culture temp

  • @ref: 24215
  • growth: positive
  • type: growth
  • temperature: 25
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 24215
  • sample type: stadium seat
  • geographic location: California, Coronado, Coronado High School, Niedermeyer Field
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Industrial
  • Cat3: #Engineered product

taxonmaps

  • @ref: 69479
  • File name: preview.99_2373.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_20;96_1278;97_1518;98_1848;99_2373&stattab=map
  • Last taxonomy: Croceibacterium
  • 16S sequence: KP122961
  • Sequence Identity:
  • Total samples: 18164
  • soil counts: 4926
  • aquatic counts: 3187
  • animal counts: 7197
  • plant counts: 2854

Safety information

risk assessment

  • @ref: 24215
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24215
  • description: Porphyrobacter mercurialis strain Coronado 16S ribosomal RNA gene, partial sequence
  • accession: KP122961
  • length: 1482
  • database: ena
  • NCBI tax ID: 1572751

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Croceibacterium mercuriale CoronadoGCA_000802385contigncbi1572751
66792Croceibacterium mercuriale Coronado2639762748draftimg1572751

GC content

  • @ref: 24215
  • GC-content: 67.3
  • method: sequence analysis

External links

@ref: 24215

culture collection no.: DSM 29971, LMG 28700

straininfo link

  • @ref: 90765
  • straininfo: 405917

literature

topicPubmed-IDtitleauthorsjournalDOIyeartopic2
Genetics26586867Draft Genome Sequence of Porphyrobacter mercurialis (sp. nov.) Strain Coronado.Coil DA, Eisen JAGenome Announc10.1128/genomeA.00856-152015Phylogeny
Phylogeny26587357Porphyrobacter mercurialis sp. nov., isolated from a stadium seat and emended description of the genus Porphyrobacter.Coil DA, Flanagan JC, Stump A, Alexiev A, Lang JM, Eisen JAPeerJ10.7717/peerj.14002015

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24215Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29971Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29971)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
90765Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405917.1