Strain identifier

BacDive ID: 132411

Type strain: No

Species: Enterobacter bugandensis

Strain Designation: 261, EB-261

Strain history: <- T. Hain, Justus-Liebig-Universität, Giessen, Germany <- S. E. Mshana, Weill Bugando Univ. College of Health Scs., Mwanza, Tanzania; EB-261

NCBI tax ID(s): 881260 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 24200

BacDive-ID: 132411

DSM-Number: 101092

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Enterobacter bugandensis 261 is a mesophilic bacterium that was isolated from Blood.

NCBI tax id

  • NCBI tax id: 881260
  • Matching level: species

strain history

  • @ref: 24200
  • history: <- T. Hain, Justus-Liebig-Universität, Giessen, Germany <- S. E. Mshana, Weill Bugando Univ. College of Health Scs., Mwanza, Tanzania; EB-261

doi: 10.13145/bacdive132411.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Enterobacter
  • species: Enterobacter bugandensis
  • full scientific name: Enterobacter bugandensis Doijad et al. 2016

@ref: 24200

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Enterobacter

species: Enterobacter bugandensis

full scientific name: Enterobacter bugandensis Doijad et al. 2016

strain designation: 261, EB-261

type strain: no

Culture and growth conditions

culture medium

  • @ref: 24200
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 24200
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine-degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836817997dinitrogenno
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOXNO2N2
24200++-++----+-+++++++++
24200++-++----+-++-++++++-+/--

Isolation, sampling and environmental information

isolation

  • @ref: 24200
  • sample type: Blood
  • geographic location: Mwanza
  • country: Tanzania
  • origin.country: TZA
  • continent: Africa

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Fluids#Blood
#Infection#Patient

taxonmaps

  • @ref: 69479
  • File name: preview.99_120.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_17;99_120&stattab=map
  • Last taxonomy: Enterobacteriaceae
  • 16S sequence: KT948979
  • Sequence Identity:
  • Total samples: 13334
  • soil counts: 615
  • aquatic counts: 1353
  • animal counts: 10132
  • plant counts: 1234

Sequence information

16S sequences

  • @ref: 24200
  • description: Enterobacter bugandensis strain EB-261 16S ribosomal RNA gene, partial sequence
  • accession: KT948979
  • length: 1142
  • database: ena
  • NCBI tax ID: 881260

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Enterobacter bugandensis strain FDAARGOS_1497881260.93completepatric881260
66792Enterobacter bugandensis strain FDAARGOS_1497881260.117completepatric881260
66792Enterobacter bugandensis strain FDAARGOS_1497881260.102completepatric881260
66792Enterobacter bugandensis strain FDAARGOS_1497881260.109completepatric881260

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes89.546no
flagellatedno59.227no
gram-positiveno97.963no
anaerobicno95.91no
halophileno89.155no
spore-formingno93.116no
thermophileno99.612no
glucose-utilyes95.747no
aerobicyes80.746no
glucose-fermentyes92.92no

External links

@ref: 24200

culture collection no.: DSM 101092

straininfo link

  • @ref: 90752
  • straininfo: 399920

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24200Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-101092Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101092)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
90752Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID399920.1