Strain identifier
BacDive ID: 132404
Type strain:
Species: Enterobacter bugandensis
Strain Designation: 247, 247BMC, EB-247
Strain history: <- T. Chakraborty, Justus-Liebig-Universität, Giessen, Germany; EB-247 <- Weill Bugando Univ. College of Health Scs., Mwanza, Tanzania
NCBI tax ID(s): 881260 (species)
General
@ref: 24193
BacDive-ID: 132404
DSM-Number: 29888
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped, colony-forming
description: Enterobacter bugandensis 247 is a facultative anaerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from human blood of a neonate.
NCBI tax id
- NCBI tax id: 881260
- Matching level: species
strain history
- @ref: 24193
- history: <- T. Chakraborty, Justus-Liebig-Universität, Giessen, Germany; EB-247 <- Weill Bugando Univ. College of Health Scs., Mwanza, Tanzania
doi: 10.13145/bacdive132404.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Enterobacter
- species: Enterobacter bugandensis
- full scientific name: Enterobacter bugandensis Doijad et al. 2016
@ref: 24193
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Enterobacter
species: Enterobacter bugandensis
full scientific name: Enterobacter bugandensis Doijad et al. 2016
strain designation: 247, 247BMC, EB-247
type strain: yes
Morphology
cell morphology
- @ref: 43786
- gram stain: negative
- cell length: 2-3 µm
- cell width: 0.5 µm
- cell shape: rod-shaped
- motility: yes
colony morphology
@ref | colony color | colony shape | incubation period | medium used | colony size |
---|---|---|---|---|---|
43786 | White | circular | 1 day | Luria-Bertani agar | |
43786 | White, opaque | circular | 1 day | MacConkey agar | 1-2 mm |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
43786 | LB (Luria-Bertani) MEDIUM | yes | ||
43786 | MacConkey agar | yes | ||
24193 | BHI MEDIUM (DSMZ Medium 215) | yes | https://mediadive.dsmz.de/medium/215 | Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water |
24193 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
43786 | positive | optimum | 37 | mesophilic |
24193 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 43786
- oxygen tolerance: facultative anaerobe
halophily
- @ref: 43786
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-9 %(w/v)
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
43786 | 43943 | methyl alpha-D-mannoside | - | assimilation |
43786 | 32032 | potassium gluconate | - | assimilation |
43786 | 27897 | tryptophan | - | energy source |
43786 | 27613 | amygdalin | - | fermentation |
43786 | 16947 | citrate | + | carbon source |
43786 | 17634 | D-glucose | + | fermentation |
43786 | 16899 | D-mannitol | + | fermentation |
43786 | 17924 | D-sorbitol | + | fermentation |
43786 | 17268 | myo-inositol | + | fermentation |
43786 | 30849 | L-arabinose | + | fermentation |
43786 | 62345 | L-rhamnose | + | fermentation |
43786 | 28053 | melibiose | + | fermentation |
43786 | 17992 | sucrose | + | fermentation |
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | 24265 | gluconate | - | builds acid from |
68371 | 18403 | L-arabitol | - | builds acid from |
68371 | 18333 | D-arabitol | - | builds acid from |
68371 | 18287 | L-fucose | - | builds acid from |
68371 | 28847 | D-fucose | - | builds acid from |
68371 | 16443 | D-tagatose | - | builds acid from |
68371 | 62318 | D-lyxose | + | builds acid from |
68371 | 32528 | turanose | - | builds acid from |
68371 | 17151 | xylitol | - | builds acid from |
68371 | 28087 | glycogen | - | builds acid from |
68371 | 28017 | starch | - | builds acid from |
68371 | 6731 | melezitose | - | builds acid from |
68371 | 15443 | inulin | - | builds acid from |
68371 | 17716 | lactose | + | builds acid from |
68371 | 17306 | maltose | + | builds acid from |
68371 | 17057 | cellobiose | + | builds acid from |
68371 | 17814 | salicin | + | builds acid from |
68371 | 4853 | esculin | + | builds acid from |
68371 | 18305 | arbutin | + | builds acid from |
68371 | 27613 | amygdalin | - | builds acid from |
68371 | 59640 | N-acetylglucosamine | - | builds acid from |
68371 | 320061 | methyl alpha-D-glucopyranoside | + | builds acid from |
68371 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
68371 | 17924 | D-sorbitol | + | builds acid from |
68371 | 17268 | myo-inositol | + | builds acid from |
68371 | 16813 | galactitol | + | builds acid from |
68371 | 12936 | D-galactose | + | builds acid from |
68371 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
68371 | 15963 | ribitol | - | builds acid from |
68371 | 65328 | L-xylose | - | builds acid from |
68371 | 65327 | D-xylose | + | builds acid from |
68371 | 16988 | D-ribose | + | builds acid from |
68371 | 17108 | D-arabinose | - | builds acid from |
68371 | 17113 | erythritol | - | builds acid from |
68371 | 17754 | glycerol | + | builds acid from |
68368 | 17632 | nitrate | - | reduction |
68368 | 30849 | L-arabinose | + | fermentation |
68368 | 27613 | amygdalin | + | fermentation |
68368 | 28053 | melibiose | + | fermentation |
68368 | 62345 | L-rhamnose | + | fermentation |
68368 | 30911 | sorbitol | + | fermentation |
68368 | 16899 | D-mannitol | + | fermentation |
68368 | 17634 | D-glucose | + | fermentation |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | - | hydrolysis |
68368 | 16947 | citrate | + | assimilation |
68368 | 18257 | ornithine | + | degradation |
68368 | 25094 | lysine | - | degradation |
68368 | 29016 | arginine | + | hydrolysis |
antibiotic resistance
@ref | ChEBI | metabolite | is antibiotic | is sensitive | is resistant | group ID |
---|---|---|---|---|---|---|
43786 | 471744 | imipenem | yes | yes | ||
43786 | 43968 | meropenem | yes | yes | ||
43786 | 71415 | nitrofurantoin | yes | yes | ||
43786 | 28971 | ampicillin | yes | yes | ||
43786 | amoxicillin | yes | yes | 10 | ||
43786 | 48947 | clavulanic acid | yes | yes | 10 | |
43786 | 8232 | piperacillin | yes | yes | ||
43786 | piperacillin + tazobactam | yes | yes | |||
43786 | 124991 | cefalotin | yes | yes | ||
43786 | 3515 | cefuroxime | yes | yes | ||
43786 | 209807 | cefoxitin | yes | yes | ||
43786 | 204928 | cefotaxime | yes | yes | ||
43786 | 3508 | ceftazidime | yes | yes | ||
43786 | 17833 | gentamicin | yes | yes | ||
43786 | 28864 | tobramycin | yes | yes | ||
43786 | 100241 | ciprofloxacin | yes | yes | ||
43786 | 100246 | norfloxacin | yes | yes | ||
43786 | 27902 | tetracycline | yes | yes | ||
43786 | 45924 | trimethoprim | yes | yes | 26 | |
43786 | 9332 | sulfamethoxazole | yes | yes | 26 | |
43786 | 3504 | cefpodoxime | yes | yes |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
43786 | 15688 | acetoin | no |
43786 | 16136 | hydrogen sulfide | no |
43786 | 35581 | indole | no |
68368 | 17997 | dinitrogen | yes |
68368 | 16301 | nitrite | no |
68368 | 15688 | acetoin | yes |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
43786 | 15688 | acetoin | - | |
43786 | 35581 | indole | - | |
68368 | 15688 | acetoin | + | |
68368 | 35581 | indole | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
43786 | catalase | + | 1.11.1.6 |
43786 | cytochrome oxidase | - | 1.9.3.1 |
43786 | beta-galactosidase | + | 3.2.1.23 |
43786 | arginine dihydrolase | + | 3.5.3.6 |
43786 | ornithine decarboxylase | + | 4.1.1.17 |
43786 | urease | - | 3.5.1.5 |
43786 | gelatinase | - | |
43786 | tryptophan deaminase | - | 4.1.99.1 |
43786 | lysine decarboxylase | - | 4.1.1.18 |
68368 | cytochrome oxidase | - | 1.9.3.1 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | lysine decarboxylase | - | 4.1.1.18 |
68368 | arginine dihydrolase | + | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | NO2 | N2 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
24193 | + | + | - | + | + | - | - | - | - | + | - | + | + | +/- | + | + | +/- | + | + | + | - | - | + |
24193 | + | + | - | + | + | - | - | - | - | + | - | + | + | +/- | + | + | + | + | + | + | |||
24193 | + | + | - | + | + | - | - | - | - | + | - | + | + | - | + | + | + | + | + | + | - | - | + |
API 50CHac
@ref | Q | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
24193 | - | + | - | - | +/- | + | + | - | - | - | + | +/- | +/- | +/- | - | + | + | + | + | + | - | + | - | - | + | + | + | + | + | + | + | +/- | +/- | - | - | + | - | - | - | + | - | + | - | - | - | - | - | - | - | - |
24193 | - | + | - | - | +/- | + | + | - | - | - | + | - | - | - | - | +/- | + | + | +/- | + | - | + | - | - | + | + | + | + | + | + | +/- | - | - | - | - | +/- | - | - | - | - | - | + | - | - | - | - | - | - | - | - |
24193 | - | + | - | - | + | + | + | - | - | - | + | + | + | + | +/- | + | + | + | + | + | - | + | - | - | + | + | + | + | + | + | +/- | +/- | +/- | - | - | + | - | - | - | +/- | - | + | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
24193 | human blood of a neonate | Mwanza | Tanzania | TZA | Africa |
43786 | A blood sample of neonate in Mwanza | Mwanza | Tanzania | TZA | Africa |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | #Child |
#Host Body Product | #Fluids | #Blood |
taxonmaps
- @ref: 69479
- File name: preview.99_120.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_17;99_120&stattab=map
- Last taxonomy: Enterobacteriaceae
- 16S sequence: HQ122932
- Sequence Identity:
- Total samples: 13334
- soil counts: 615
- aquatic counts: 1353
- animal counts: 10132
- plant counts: 1234
Sequence information
16S sequences
- @ref: 24193
- description: Enterobacter bugandensis strain 247BMC 16S ribosomal RNA gene, partial sequence
- accession: HQ122932
- length: 1444
- database: ena
- NCBI tax ID: 881260
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Enterobacter bugandensis EB-247 | GCA_900324475 | complete | ncbi | 881260 |
66792 | Enterobacter bugandensis strain FDAARGOS 1427 | 881260.84 | complete | patric | 881260 |
66792 | Enterobacter bugandensis EB-247 | 2791355295 | draft | img | 881260 |
66792 | Enterobacter bugandensis EB-247 | 2859686987 | complete | img | 881260 |
GC content
@ref | GC-content | method |
---|---|---|
43786 | 56 | genome sequence analysis |
24193 | 56 | sequence analysis |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 60.602 | no |
gram-positive | no | 97.839 | yes |
anaerobic | no | 96.046 | yes |
aerobic | yes | 81.461 | yes |
halophile | no | 87.896 | no |
spore-forming | no | 93.289 | no |
thermophile | no | 99.535 | yes |
glucose-util | yes | 95.469 | no |
motile | yes | 90.398 | no |
glucose-ferment | yes | 93.564 | yes |
External links
@ref: 24193
culture collection no.: DSM 29888, NCCB 100573
straininfo link
- @ref: 90745
- straininfo: 401827
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 26637818 | Enterobacter bugandensis sp. nov., isolated from neonatal blood. | Doijad S, Imirzalioglu C, Yao Y, Pati NB, Falgenhauer L, Hain T, Foesel BU, Abt B, Overmann J, Mirambo MM, Mshana SE, Chakraborty T | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000821 | 2015 | ||
Metabolism | 29599516 | Enterobacter bugandensis: a novel enterobacterial species associated with severe clinical infection. | Pati NB, Doijad SP, Schultze T, Mannala GK, Yao Y, Jaiswal S, Ryan D, Suar M, Gwozdzinski K, Bunk B, Mraheil MA, Marahiel MA, Hegemann JD, Sproer C, Goesmann A, Falgenhauer L, Hain T, Imirzalioglu C, Mshana SE, Overmann J, Chakraborty T | Sci Rep | 10.1038/s41598-018-23069-z | 2018 | Animals, Anti-Bacterial Agents/pharmacology, Cytokines/metabolism, Disease Models, Animal, Drug Resistance, Bacterial/drug effects, Enterobacter/*genetics/physiology, Enterobacteriaceae Infections/microbiology/mortality/*pathology, *Genome, Bacterial, Humans, Mice, O Antigens/chemistry/immunology, Plasmids/genetics/metabolism, Survival Rate, Transcriptome, Virulence/genetics, beta-Lactams/metabolism | Pathogenicity |
Genetics | 30466389 | Multi-drug resistant Enterobacter bugandensis species isolated from the International Space Station and comparative genomic analyses with human pathogenic strains. | Singh NK, Bezdan D, Checinska Sielaff A, Wheeler K, Mason CE, Venkateswaran K | BMC Microbiol | 10.1186/s12866-018-1325-2 | 2018 | Anti-Bacterial Agents/pharmacology, *Drug Resistance, Multiple, Bacterial, Enterobacter/classification/*drug effects/*genetics/isolation & purification, Enterobacteriaceae Infections/*microbiology, Genome, Bacterial, Genomics, Humans, Microbial Sensitivity Tests, Multilocus Sequence Typing, Phylogeny, *Spacecraft/statistics & numerical data, Whole Genome Sequencing | Pathogenicity |
Phylogeny | 34037857 | Generation of electrical energy in a microbial fuel cell coupling acetate oxidation to Fe(3+) reduction and isolation of the involved bacteria. | Becerril-Varela K, Serment-Guerrero JH, Manzanares-Leal GL, Ramirez-Duran N, Guerrero-Barajas C | World J Microbiol Biotechnol | 10.1007/s11274-021-03077-4 | 2021 | Acetates/metabolism, Bacteria/*classification/genetics/isolation & purification, Biodegradation, Environmental, Bioelectric Energy Sources/*microbiology, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Iron/*chemistry, Oxidation-Reduction, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Sequence Analysis, RNA/*methods, Sewage/microbiology | Transcriptome |
Reference
@id | authors | title | doi/url | catalogue | journal | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
24193 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29888 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29888) | |||
43786 | Swapnil Doijad, Can Imirzalioglu, Yancheng Yao, Niladri Bhusan Pati, Linda Falgenhauer, Torsten Hain, Bärbel U. Foesel, Birte Abt, Jö¨rg Overmann, Mariam M. Mirambo, Stephen E. Mshana, Trinad Chakraborty | Enterobacter bugandensis sp. nov., isolated from neonatal blood | 10.1099/ijsem.0.000821 | IJSEM 66: 968-974 2016 | 26637818 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
68368 | Automatically annotated from API 20E | |||||
68371 | Automatically annotated from API 50CH acid | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
90745 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401827.1 |