Strain identifier

BacDive ID: 132401

Type strain: Yes

Species: Actinomadura jiaoheensis

Strain Designation: NEAU-Jh1-3

Strain history: C. Liu; Northeast Agric. Univ., China; NEAU-Jh1-3.

NCBI tax ID(s): 1544727 (species)

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General

@ref: 24190

BacDive-ID: 132401

DSM-Number: 102127

keywords: 16S sequence, Bacteria, mesophilic

description: Actinomadura jiaoheensis NEAU-Jh1-3 is a mesophilic bacterium that was isolated from muddy soil from a riverbank.

NCBI tax id

  • NCBI tax id: 1544727
  • Matching level: species

strain history

@refhistory
24190<- JCM; JCM 30341 <- C. Liu; Northeast Agric. Univ., China; NEAU-Jh1-3
67770C. Liu; Northeast Agric. Univ., China; NEAU-Jh1-3.

doi: 10.13145/bacdive132401.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Thermomonosporaceae
  • genus: Actinomadura
  • species: Actinomadura jiaoheensis
  • full scientific name: Actinomadura jiaoheensis Zhao et al. 2016

@ref: 24190

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Thermomonosporaceae

genus: Actinomadura

species: Actinomadura jiaoheensis

full scientific name: Actinomadura jiaoheensis Zhao et al. 2016

strain designation: NEAU-Jh1-3

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
24190N-Z-AMINE-MEDIUM (DSMZ Medium 554)yeshttps://mediadive.dsmz.de/medium/554Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water
24190GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf

culture temp

@refgrowthtypetemperature
24190positivegrowth28
67770positivegrowth28

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-9(H6), MK-9(H4), MK-9(H8)

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
24190muddy soil from a riverbankJilin Province, JiaoheChinaCHNAsia43127.55
67770Muddy soil from a riverbank in JiaoheJilin Province, north ChinaChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Mud (Sludge)
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 24190
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24190
  • description: Actinomadura jiaoheensis strain NEAU-Jh1-3 16S ribosomal RNA gene, partial sequence
  • accession: KM000835
  • length: 1511
  • database: nuccore
  • NCBI tax ID: 1544727

GC content

@refGC-contentmethod
2419067.6thermal denaturation, midpoint method (Tm)
6777067.7-68.7thermal denaturation, midpoint method (Tm)

External links

@ref: 24190

culture collection no.: DSM 102127, CGMCC 4.7197, JCM 30341

straininfo link

  • @ref: 90743
  • straininfo: 399285

literature

  • topic: Phylogeny
  • Pubmed-ID: 26373415
  • title: Actinomadura jiaoheensis sp. nov. and Actinomadura sporangiiformans sp. nov., two novel actinomycetes isolated from muddy soil and emended description of the genus Actinomadura.
  • authors: Zhao J, Guo L, Sun P, Han C, Bai L, Liu C, Li Y, Xiang W, Wang X
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-015-0585-1
  • year: 2015
  • mesh: Actinobacteria/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24190Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102127Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102127)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
90743Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID399285.1