Strain identifier
BacDive ID: 132399
Type strain: 
Species: Kroppenstedtia sanguinis
Strain Designation: X0209
Strain history: <- M. Bell, Center for Disease Control and Prevention, Atlanta; X0209 <- CDC <- E. Falsen, CCUG
NCBI tax ID(s): 1380684 (species)
version 8.1 (current version)
General
@ref: 24188
BacDive-ID: 132399
DSM-Number: 45749
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, human pathogen
description: Kroppenstedtia sanguinis X0209 is an aerobe, mesophilic human pathogen that was isolated from human blood of a 59-year-old male.
NCBI tax id
- NCBI tax id: 1380684
- Matching level: species
strain history
- @ref: 24188
- history: <- M. Bell, Center for Disease Control and Prevention, Atlanta; X0209 <- CDC <- E. Falsen, CCUG
doi: 10.13145/bacdive132399.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Thermoactinomycetaceae
- genus: Kroppenstedtia
- species: Kroppenstedtia sanguinis
- full scientific name: Kroppenstedtia sanguinis Bell et al. 2016
@ref: 24188
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Thermoactinomycetaceae
genus: Kroppenstedtia
species: Kroppenstedtia sanguinis
full scientific name: Kroppenstedtia sanguinis Bell et al. 2016
strain designation: X0209
type strain: yes
Morphology
colony morphology
- @ref: 54380
- incubation period: 2-4 days
multimedia
- @ref: 24188
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45749.jpg
- caption: Medium 535a 45°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 24188 | BHI MEDIUM (DSMZ Medium 215) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium215.pdf | |
| 24188 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf | |
| 24188 | TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) | yes | https://mediadive.dsmz.de/medium/535a | Name: TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) Composition: None 50.0 g/l Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 54380 | positive | growth | 37 | mesophilic |
| 24188 | positive | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 54380
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | sampling date |
|---|---|---|---|---|---|---|
| 24188 | human blood of a 59-year-old male | Gävle | Sweden | SWE | Europe | |
| 54380 | Human blood,59-yr-old man | Gävle | Sweden | SWE | Europe | 1997-10-01 |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | #Male |
| #Host Body Product | #Fluids | #Blood |
taxonmaps
- @ref: 69479
- File name: preview.99_72945.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_358;96_31058;97_39279;98_51099;99_72945&stattab=map
- Last taxonomy: Kroppenstedtia sanguinis subclade
- 16S sequence: AJ251778
- Sequence Identity:
- Total samples: 8258
- soil counts: 2776
- aquatic counts: 832
- animal counts: 4049
- plant counts: 601
Safety information
risk assessment
- @ref: 24188
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24188
- description: Thermoactinomyces sanguinis partial 16S rRNA gene
- accession: AJ251778
- length: 1508
- database: ena
- NCBI tax ID: 110099
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Kroppenstedtia sanguinis DSM 45749 | 2901216574 | draft | img | 1380684 |
| 66792 | Kroppenstedtia sanguinis X0209 | 2867267787 | draft | img | 1380684 |
GC content
- @ref: 24188
- GC-content: 50.6
- method: high performance liquid chromatography (HPLC)
External links
@ref: 24188
culture collection no.: DSM 45749, CCUG 38657
straininfo link
- @ref: 90741
- straininfo: 11586
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 26910402 | Kroppenstedtia pulmonis sp. nov. and Kroppenstedtia sanguinis sp. nov., isolated from human patients. | Bell ME, Lasker BA, Klenk HP, Hoyles L, Sproer C, Schumann P, Brown JM | Antonie Van Leeuwenhoek | 10.1007/s10482-016-0663-z | 2016 | Adolescent, Aged, Bacterial Typing Techniques, DNA, Bacterial/genetics, Female, Gram-Positive Bacterial Infections/blood/cerebrospinal fluid/*microbiology, Humans, Lung/microbiology, Male, Middle Aged, Phylogeny, RNA, Ribosomal, 16S/genetics, Spores, Bacterial/cytology, Thermoactinomyces/classification/cytology/genetics/*isolation & purification | Pathogenicity |
| Genetics | 31196918 | Draft Genome Sequence of Kroppenstedtia sanguinis X0209(T), a Clinical Isolate Recovered from Human Blood. | Arthur RA, Nicholson AC, Humrighouse BW, McQuiston JR, Lasker BA | Microbiol Resour Announc | 10.1128/MRA.00354-19 | 2019 |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24188 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45749 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45749) | |
| 54380 | Curators of the CCUG | https://www.ccug.se/strain?id=38657 | Culture Collection University of Gothenburg (CCUG) (CCUG 38657) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 90741 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID11586.1 |