Strain identifier

BacDive ID: 132398

Type strain: Yes

Species: Kibdelosporangium banguiense

Strain Designation: F-240,109

Strain history: <- O. Genilloud, Fundación Medina,Granada,Spain; F-240,109

NCBI tax ID(s): 1365924 (species)

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General

@ref: 24187

BacDive-ID: 132398

DSM-Number: 46670

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive

description: Kibdelosporangium banguiense F-240 is a spore-forming, mesophilic, Gram-positive bacterium that builds an aerial mycelium and was isolated from soil.

NCBI tax id

  • NCBI tax id: 1365924
  • Matching level: species

strain history

  • @ref: 24187
  • history: <- O. Genilloud, Fundación Medina,Granada,Spain; F-240,109

doi: 10.13145/bacdive132398.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Kibdelosporangium
  • species: Kibdelosporangium banguiense
  • full scientific name: Kibdelosporangium banguiense Pascual et al. 2016

@ref: 24187

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Kibdelosporangium

species: Kibdelosporangium banguiense

full scientific name: Kibdelosporangium banguiense Pascual et al. 2016

strain designation: F-240,109

type strain: yes

Morphology

cell morphology

@refgram stainconfidencemotility
69480positive100
6948092.092no

colony morphology

@refcolony colormedium used
69462Grey beige (1019), black brown (8022)ISP 5
69462Graphite grey (7024), grey beige (1019)ISP 7
69462Brown beige (1011)suter with tyrosine
69462Beige (1001)ISP 2
69462Ivory (1014)ISP 3
69462Light ivory (1015)suter without tyrosine
69462Sand yellow (1002)ISP 6

multicellular morphology

@refforms multicellular complexcomplex namemedium namecomplex color
69462noAerial myceliumISP 2
69462yesAerial myceliumISP 3Pure white (9010)
69462noAerial myceliumISP 4
69462yesAerial myceliumISP 5Traffic white (9016)
69462noAerial myceliumISP 6
69462yesAerial myceliumISP 7Traffic white (9016)
69462noAerial myceliumsuter with tyrosine
69462noAerial myceliumsuter without tyrosine

pigmentation

@refproductionnamecolor
69462noMelanin
69462yessoluble pigmentSand yellow (1002), beige (1001)

multimedia

@refmultimedia contentcaptionintellectual property rights
24187https://www.dsmz.de/microorganisms/photos/DSM_46670.jpgMedium 65 28°C© Leibniz-Institut DSMZ
69462DSM_46670_image3.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69462DSM_46670_image4.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

  • @ref: 24187
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

  • @ref: 24187
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

halophily

  • @ref: 69462
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6946222599arabinose+growth
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction
6946262968cellulose+/-growth
6946228757fructose+growth
6946217234glucose+growth
6946217268inositol+growth
6946237684mannose+growth
6946216634raffinose+growth
6946226546rhamnose+/-growth
6946217992sucrose+growth
6946218222xylose+growth
6837917632nitrate+reduction
683794853esculin+hydrolysis
6837916199urea-hydrolysis
683795291gelatin+hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68379gelatinase+
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase+3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase-3.5.1.B15
68369gelatinase+
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382beta-glucuronidase-3.2.1.31
68382N-acetyl-beta-glucosaminidase+3.2.1.52

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69462+-++-+-++-+--------

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
24187-----+-----+/-----+/-++/--
69462++/-+/--+++/-++++/-++-+++++/-

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
24187+----+++++++++---++/--

Isolation, sampling and environmental information

isolation

  • @ref: 24187
  • sample type: soil
  • geographic location: plateau of Bangui, forest of Pama
  • country: Central African Republic
  • origin.country: CAF
  • continent: Africa

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_173990.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_415;97_470;98_76282;99_173990&stattab=map
  • Last taxonomy: Kibdelosporangium banguiense
  • 16S sequence: HG326647
  • Sequence Identity:
  • Total samples: 258
  • soil counts: 224
  • aquatic counts: 1
  • animal counts: 7
  • plant counts: 26

Safety information

risk assessment

  • @ref: 24187
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24187
  • description: Kibdelosporangium banguiense partial 16S rRNA gene, type strain F-240,109T
  • accession: HG326647
  • length: 1435
  • database: ena
  • NCBI tax ID: 1365924

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Kibdelosporangium banguiense DSM 46670GCA_017876405contigncbi1365924
66792Kibdelosporangium banguiense strain DSM 466701365924.4wgspatric1365924
66792Kibdelosporangium banguiense DSM 466702918329165draftimg1365924

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno92.477no
gram-positiveyes83.842no
anaerobicno98.724no
halophileno90.272no
spore-formingyes93.273no
glucose-utilyes89.316yes
thermophileno98.784no
flagellatedno97.36no
aerobicyes89.318no
glucose-fermentno91.703yes

External links

@ref: 24187

culture collection no.: DSM 46670, LMG 28181

straininfo link

  • @ref: 90740
  • straininfo: 398227

literature

  • topic: Phylogeny
  • Pubmed-ID: 26936255
  • title: Description of Kibdelosporangium banguiense sp. nov., a novel actinomycete isolated from soil of the forest of Pama, on the plateau of Bangui, Central African Republic.
  • authors: Pascual J, Gonzalez I, Estevez M, Benito P, Trujillo ME, Genilloud O
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-016-0669-6
  • year: 2016
  • mesh: Actinomycetales/*classification/cytology/genetics/*isolation & purification, Bacterial Typing Techniques, Central African Republic, DNA, Bacterial/genetics, *Forests, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Soil, *Soil Microbiology
  • topic2: Phenotype

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24187Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-46670Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46670)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69462Wink, J.Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweighttps://cdn.dsmz.de/wink/DSM%2046670.pdf
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
90740Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID398227.1