Strain identifier

BacDive ID: 132388

Type strain: Yes

Species: Clostridium liquoris

Strain Designation: BEY10

Strain history: <- Y. Tao, CAS, Chengdu Inst. of Biology; BEY10 <- D. X. Li {2012}

NCBI tax ID(s): 1289519 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 24177

BacDive-ID: 132388

DSM-Number: 100320

keywords: genome sequence, 16S sequence, Bacteria, obligate anaerobe, spore-forming, Gram-positive, rod-shaped, colony-forming

description: Clostridium liquoris BEY10 is an obligate anaerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from fermentation pit used for the production of Chinese strong-flavoured liquor.

NCBI tax id

  • NCBI tax id: 1289519
  • Matching level: species

strain history

  • @ref: 24177
  • history: <- Y. Tao, CAS, Chengdu Inst. of Biology; BEY10 <- D. X. Li {2012}

doi: 10.13145/bacdive132388.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium liquoris
  • full scientific name: Clostridium liquoris Yin et al. 2016

@ref: 24177

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Anaeroplasmatales

family: Clostridiaceae

genus: Clostridium

species: Clostridium liquoris

full scientific name: Clostridium liquoris Yin et al. 2016

strain designation: BEY10

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
43778positive2.5-6 µm0.5-1 µmrod-shapedno
69480positive100

colony morphology

  • @ref: 43778
  • colony size: 1 mm
  • colony color: Light yellow
  • colony shape: circular
  • incubation period: 3 days
  • medium used: Peptone/yeast medium

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
43778Peptone/yeast mediumyes
24177CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)yeshttps://mediadive.dsmz.de/medium/110Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water

culture temp

@refgrowthtypetemperaturerange
43778positivegrowth22-47
43778positiveoptimum37mesophilic
24177positivegrowth37mesophilic

culture pH

@refabilitytypepHPH range
43778positivegrowth5.5-9alkaliphile
43778positiveoptimum7.5-8.5

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
43778obligate anaerobe
69480anaerobe99.999

spore formation

@reftype of sporespore formationconfidence
43778sporeyes
69481yes100
69480yes100

halophily

@refsaltgrowthtested relationconcentrationhalophily level
43778NaClpositivegrowth0-4 %(w/v)
43778NaClpositiveoptimum0 %(w/v)non-halophilic

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
437784853esculin-hydrolysis
437785291gelatin-hydrolysis
4377817057cellobiose+carbon source
4377817234glucose+carbon source
4377817754glycerol+carbon source
4377817716lactose+carbon source
43778maltose hydrate+carbon source
4377829864mannitol+carbon source
4377827082trehalose+carbon source
4377818222xylose+carbon source
4377837684mannose+/-carbon source
437786731melezitose+/-carbon source
4377816634raffinose+/-carbon source
4377826546rhamnose+/-carbon source
4377830911sorbitol+/-carbon source

metabolite production

  • @ref: 43778
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

  • @ref: 43778
  • value: catalase
  • activity: -
  • ec: 1.11.1.6

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43778C15:0 anteiso31.9
    43778C15:1 anteiso A4.6
    43778C17:0 anteiso13.5
    43778C16:01.8
    43778C17:0W-cyclohexyl16.2
    43778C14:0 iso1.3
    43778C15:0 iso4.5
    43778C16:0 iso21.2
    43778C17:0 iso1.3
    43778C18:0 iso1.2
  • type of FA analysis: whole cell analysis
  • incubation medium: PYG
  • agar/liquid: liquid
  • incubation temperature: 37
  • incubation_oxygen: anaerobic
  • software version: Sherlock 6.1
  • library/peak naming table: RTSBA6 6.10
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
24177fermentation pit used for the production of Chinese strong-flavoured liquorSichuan, MianzhuChinaCHNAsia
43778An old fermentation pitMianzhu, SichuanChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Fermented
#Engineered#Other
#Engineered#Food production
#Engineered#Food production#Beverage

Safety information

risk assessment

  • @ref: 24177
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24177
  • description: Clostridium liquoris strain BEY10 16S ribosomal RNA gene, partial sequence
  • accession: KC331197
  • length: 1474
  • database: ena
  • NCBI tax ID: 1289519

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Clostridium liquoris DSM 100320GCA_002995785contigncbi1289519
66792Clostridium liquoris strain DSM 1003201289519.3wgspatric1289519
66792Clostridium liquoris DSM 1003202791355327draftimg1289519

GC content

@refGC-contentmethod
2417734.4high performance liquid chromatography (HPLC)
2417731.0sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileyes68.823yes
gram-positiveyes59.569no
anaerobicyes99.449yes
aerobicno97.457no
halophileno80.034no
spore-formingyes95.493yes
glucose-utilyes89.478no
flagellatedno70.086no
thermophileno80.925yes
glucose-fermentno53.912no

External links

@ref: 24177

culture collection no.: DSM 100320, ACCC 00785

straininfo link

  • @ref: 90731
  • straininfo: 402834

literature

topicPubmed-IDtitleauthorsjournalDOIyeartopic2
Phylogeny26597830Clostridium liquoris sp. nov., isolated from a fermentation pit used for the production of Chinese strong-flavoured liquor.Yin Q, Tao Y, Zhu X, Zhou Y, He X, Cheng L, Huang Y, Li DInt J Syst Evol Microbiol10.1099/ijsem.0.0007872015Biotechnology
Genetics29724844First Insight into the Genome Sequence of Clostridium liquoris DSM 100320, a Butyrate- and Ethanol-Producing Bacterium.Poehlein A, Neubauer H, Niemeyer P, Daniel RGenome Announc10.1128/genomeA.00376-182018

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24177Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100320Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100320)
43778Qi Yin, Yong Tao, Xiaoye Zhu, Yan Zhou, Xiaohong He, Lei Cheng, Yan Huang, Daping LiClostridium liquoris sp. nov., isolated from a fermentation pit used for the production of Chinese strong-flavoured liquor10.1099/ijsem.0.000787IJSEM 66: 749-754 201626597830
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
90731Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402834.1