Strain identifier

BacDive ID: 132386

Type strain: Yes

Species: Haloimpatiens lingqiaonensis

Strain Designation: ZC-CMC3

Strain history: <- Nai-Fang Zhang, Zhejiang Univ <- Tian-Tian Li

NCBI tax ID(s): 1380675 (species)

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General

@ref: 24175

BacDive-ID: 132386

DSM-Number: 103556

keywords: 16S sequence, Bacteria, anaerobe, chemoorganotroph, Gram-positive, motile, rod-shaped, colony-forming

description: Haloimpatiens lingqiaonensis ZC-CMC3 is an anaerobe, chemoorganotroph, Gram-positive bacterium that forms circular colonies and was isolated from wastewater of a paper mill.

NCBI tax id

  • NCBI tax id: 1380675
  • Matching level: species

strain history

@refhistory
24175<- KCTC; KCTC 15321
67770N.-F. Zhang and M. Wu ZC-CMC3.
67771<- Nai-Fang Zhang, Zhejiang Univ <- Tian-Tian Li

doi: 10.13145/bacdive132386.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Haloimpatiens
  • species: Haloimpatiens lingqiaonensis
  • full scientific name: Haloimpatiens lingqiaonensis Wu et al. 2016

@ref: 24175

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Haloimpatiens

species: Haloimpatiens lingqiaonensis

full scientific name: Haloimpatiens lingqiaonensis Wu et al. 2016

strain designation: ZC-CMC3

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangement
43790positive2.9-5.1 µm0.6-1.2 µmrod-shapedyesperitrichous
67771rod-shapedyesperitrichous
67771positive

colony morphology

  • @ref: 43790
  • colony size: 0.5-1 mm
  • colony color: White
  • colony shape: circular
  • incubation period: 2-3 days
  • medium used: Gs agar-shake

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
43790Gs agar-shakeyes
24175CLOSTRIDIUM (GS) MEDIUM (DSMZ Medium 255)yeshttps://mediadive.dsmz.de/medium/255Name: CLOSTRIDIUM (GS) MEDIUM (DSMZ Medium 255; with strain-specific modifications) Composition: Morpholinopropane sulfonic acid 9.98004 g/l Yeast extract 5.98802 g/l D-Glucose 4.99002 g/l Urea 1.99601 g/l K2HPO4 x 3 H2O 0.998004 g/l L-Cysteine HCl x H2O 0.998004 g/l KH2PO4 0.499002 g/l MgCl2 x 6 H2O 0.499002 g/l CaCl2 x 2 H2O 0.0499002 g/l FeSO4 x 7 H2O 0.0012475 g/l Sodium resazurin 0.000499002 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
43790positivegrowth25-48
43790positiveoptimum43thermophilic
24175positivegrowth37mesophilic
67770positivegrowth37mesophilic
67771positivegrowth37mesophilic

culture pH

@refabilitytypepH
43790positivegrowth5.5-8
43790positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
43790anaerobe
67771anaerobe

nutrition type

  • @ref: 43790
  • type: chemoorganotroph

spore formation

@refspore formation
43790no
67771no

halophily

@refsaltgrowthtested relationconcentrationhalophily level
43790NaClpositivegrowth0-3 %(w/v)
43790NaClpositiveoptimum0 %(w/v)non-halophilic

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4379033403elemental sulfur-electron acceptor
4379063005sodium nitrate-electron acceptor
4379078870sodium nitrite-electron acceptor
4379032149sodium sulfate-electron acceptor
4379086477sodium sulfite-electron acceptor
43790132112sodium thiosulfate-electron acceptor
4379030089acetate-growth
4379022599arabinose-growth
4379017968butyrate-growth
4379085146carboxymethylcellulose-growth
4379017057cellobiose-growth
4379016261chitosan-growth
4379016449dl-alanine-growth
4379015740formate-growth
4379028757fructose-growth
4379029806fumarate-growth
4379017234glucose-growth
4379017754glycerol-growth
4379015428glycine-growth
4379016467L-arginine-growth
4379017203L-proline-growth
4379016414L-valine-growth
4379017306maltose-growth
4379015361pyruvate-growth
4379017992sucrose-growth
4379018222xylose-growth
43790beef extract+growth
43790peptone+growth
43790tryptone+growth
43790yeast extract+growth

enzymes

@refvalueactivityec
43790catalase-1.11.1.6
43790cytochrome oxidase-1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
24175wastewater of a paper millZhejiangChinaCHNAsia30.0331120.019
43790A wastewater sample collected from a paper mill in Lingqiao townLingqiao town, ZhejiangChinaCHNAsia30.033120.019
67770Wastewater of a paper mill in Lingqiao TownZhejiangChinaCHNAsia
67771From wastewater of a paper mill factoryLingqiao town, ZhejiangChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Industrial#Plant (Factory)
#Engineered#Built environment
#Engineered#Waste#Wastewater

taxonmaps

  • @ref: 69479
  • File name: preview.99_22080.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_302;97_334;98_375;99_22080&stattab=map
  • Last taxonomy: Haloimpatiens lingqiaonensis
  • 16S sequence: KC869664
  • Sequence Identity:
  • Total samples: 1182
  • soil counts: 251
  • aquatic counts: 373
  • animal counts: 529
  • plant counts: 29

Safety information

risk assessment

  • @ref: 24175
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24175
  • description: Haloimpatiens lingqiaonensis strain ZC-CMC3 16S ribosomal RNA gene, partial sequence
  • accession: KC869664
  • length: 1476
  • database: ena
  • NCBI tax ID: 1380675

GC content

@refGC-contentmethod
2417530
6777030high performance liquid chromatography (HPLC)
6777130.0

External links

@ref: 24175

culture collection no.: DSM 103556, CCTCC AB 2013104, JCM 19210, KCTC 15321

straininfo link

  • @ref: 90729
  • straininfo: 407780

literature

  • topic: Phylogeny
  • Pubmed-ID: 26559355
  • title: Haloimpatiens lingqiaonensis gen. nov., sp. nov., an anaerobic bacterium isolated from paper-mill wastewater.
  • authors: Wu D, Zhang NF, Sun C, Zhang WW, Han SB, Pan J, Wu M, Th D, Zhu XF
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000765
  • year: 2015

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24175Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-103556Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103556)
43790Dildar. Wu, Nai-Fang Zhang, Cong Sun, Wen-Wu Zhang, Shuai-Bo Han, Jie Pan, Min Wu, Dilbar. Th, Xu-Fen ZhuHaloimpatiens lingqiaonensis gen. nov., sp. nov., an anaerobic bacterium isolated from paper-mill wastewater10.1099/ijsem.0.000765IJSEM 66: 628-632 201626559355
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
90729Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID407780.1