Strain identifier

BacDive ID: 132380

Type strain: Yes

Species: Actinorectispora indica

Strain history: <- S.-K. Tang, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; YIM 75728 <- S. R. Quadri and W.-J. Li

NCBI tax ID(s): 1034798 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 24169

BacDive-ID: 132380

DSM-Number: 45410

keywords: 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive, rod-shaped, colony-forming

description: Actinorectispora indica DSM 45410 is an aerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from soil.

NCBI tax id

  • NCBI tax id: 1034798
  • Matching level: species

strain history

  • @ref: 24169
  • history: <- S.-K. Tang, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; YIM 75728 <- S. R. Quadri and W.-J. Li

doi: 10.13145/bacdive132380.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Actinorectispora
  • species: Actinorectispora indica
  • full scientific name: Actinorectispora indica Quadri et al. 2016

@ref: 24169

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Actinorectispora

species: Actinorectispora indica

full scientific name: Actinorectispora indica Quadri et al. 2016

type strain: yes

Morphology

cell morphology

  • @ref: 43766
  • gram stain: positive
  • cell length: 0.6-1 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 43766
  • colony size: 0.1-0.2 mm
  • colony color: Light pink to white
  • colony shape: circular
  • incubation period: 14 days
  • medium used: ISP 3 medium

Culture and growth conditions

culture medium

@refnamegrowth
43766ISP 3yes
43766ISP 3 mediumyes
43766ISP 4yes
43766ISP 5yes
43766Yeast extract-malt extract agar (ISP 2)yes

culture temp

@refgrowthtypetemperaturerange
43766positivegrowth15-28
43766positiveoptimum28mesophilic

culture pH

@refabilitytypepHPH range
43766positivegrowth7-10alkaliphile
43766positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 43766
  • oxygen tolerance: aerobe

spore formation

  • @ref: 43766
  • spore description: spore chains
  • type of spore: spore
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentrationhalophily level
43766NaClpositivegrowth0-8 %(w/v)
43766NaClpositiveoptimum0 %(w/v)non-halophilic

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4376616947citrate-assimilation
4376617128adipate-carbon source
4376627613amygdalin-carbon source
4376616899D-mannitol-carbon source
4376616024D-mannose-carbon source
4376617924D-sorbitol-carbon source
4376630849L-arabinose-carbon source
4376662345L-rhamnose-carbon source
4376625115malate-carbon source
4376617306maltose-carbon source
4376628053melibiose-carbon source
43766506227N-acetylglucosamine-carbon source
4376618401phenylacetate-carbon source
4376653258sodium citrate-carbon source
4376617634D-glucose+builds acid from
4376616899D-mannitol+builds acid from
4376617268myo-inositol+builds acid from
4376617992sucrose+builds acid from
4376627689decanoate+carbon source
4376617634D-glucose+carbon source
4376616899D-mannitol+carbon source
4376617268myo-inositol+carbon source
4376632032potassium gluconate+carbon source
4376617992sucrose+carbon source
437663557154-nitrophenyl beta-D-galactopyranoside+hydrolysis
43766casein+hydrolysis
437664853esculin+hydrolysis
4376616467L-arginine+hydrolysis
4376616828L-tryptophan+hydrolysis
4376628017starch+hydrolysis
4376617632nitrate+reduction

metabolite production

@refChebi-IDmetaboliteproduction
4376615688acetoinyes
4376616136hydrogen sulfideyes

metabolite tests

  • @ref: 43766
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
43766cytochrome oxidase-1.9.3.1
43766catalase+1.11.1.6

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
24169soilAndhra Pradesh province, Kurnool, limestone quarryIndiaINDAsia
43766Soil sampleKurnool, Andhra Pradesh provinceIndiaINDAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_130992.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_840;97_65645;98_87656;99_130992&stattab=map
  • Last taxonomy: Actinorectispora indica subclade
  • 16S sequence: JF789453
  • Sequence Identity:
  • Total samples: 96
  • soil counts: 56
  • aquatic counts: 11
  • animal counts: 25
  • plant counts: 4

Sequence information

16S sequences

  • @ref: 24169
  • description: Actinorectispora indica strain YIM 75728 16S ribosomal RNA gene, partial sequence
  • accession: JF789453
  • length: 1445
  • database: ena
  • NCBI tax ID: 1034798

GC content

@refGC-contentmethod
4376668high performance liquid chromatography (HPLC)
2416968.0high performance liquid chromatography (HPLC)

External links

@ref: 24169

culture collection no.: DSM 45410, CCTCC AA 209065, YIM 75728

literature

  • topic: Phylogeny
  • Pubmed-ID: 26637823
  • title: Actinorectispora indica gen. nov., sp. nov. isolated from soil, a member of the family Pseudonocardiaceae.
  • authors: Quadri SR, Tian XP, Zhang J, Ruwaili JA, Hozzein WN, Agsar D, Li WJ, Dastager SG
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000814
  • year: 2015

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24169Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-45410Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45410)
43766Syed Raziuddin Quadri, Xin-Peng Tian, Jing Zhang, Jamal Al Ruwaili, Wael N. Hozzein, Dayanand Agsar, Wen-Jun Li, SyedG.DastagerActinorectispora indica gen. nov., sp. nov. isolated from soil, a member of the family Pseudonocardiaceae10.1099/ijsem.0.000814IJSEM 66: 939-945 201626637823
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/