Strain identifier
BacDive ID: 132380
Type strain:
Species: Actinorectispora indica
Strain history: <- S.-K. Tang, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; YIM 75728 <- S. R. Quadri and W.-J. Li
NCBI tax ID(s): 1034798 (species)
General
@ref: 24169
BacDive-ID: 132380
DSM-Number: 45410
keywords: 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive, rod-shaped, colony-forming
description: Actinorectispora indica DSM 45410 is an aerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from soil.
NCBI tax id
- NCBI tax id: 1034798
- Matching level: species
strain history
- @ref: 24169
- history: <- S.-K. Tang, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; YIM 75728 <- S. R. Quadri and W.-J. Li
doi: 10.13145/bacdive132380.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Actinorectispora
- species: Actinorectispora indica
- full scientific name: Actinorectispora indica Quadri et al. 2016
@ref: 24169
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Actinorectispora
species: Actinorectispora indica
full scientific name: Actinorectispora indica Quadri et al. 2016
type strain: yes
Morphology
cell morphology
- @ref: 43766
- gram stain: positive
- cell length: 0.6-1 µm
- cell shape: rod-shaped
- motility: no
colony morphology
- @ref: 43766
- colony size: 0.1-0.2 mm
- colony color: Light pink to white
- colony shape: circular
- incubation period: 14 days
- medium used: ISP 3 medium
Culture and growth conditions
culture medium
@ref | name | growth |
---|---|---|
43766 | ISP 3 | yes |
43766 | ISP 3 medium | yes |
43766 | ISP 4 | yes |
43766 | ISP 5 | yes |
43766 | Yeast extract-malt extract agar (ISP 2) | yes |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
43766 | positive | growth | 15-28 | |
43766 | positive | optimum | 28 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
43766 | positive | growth | 7-10 | alkaliphile |
43766 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 43766
- oxygen tolerance: aerobe
spore formation
- @ref: 43766
- spore description: spore chains
- type of spore: spore
- spore formation: yes
halophily
@ref | salt | growth | tested relation | concentration | halophily level |
---|---|---|---|---|---|
43766 | NaCl | positive | growth | 0-8 %(w/v) | |
43766 | NaCl | positive | optimum | 0 %(w/v) | non-halophilic |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
43766 | 16947 | citrate | - | assimilation |
43766 | 17128 | adipate | - | carbon source |
43766 | 27613 | amygdalin | - | carbon source |
43766 | 16899 | D-mannitol | - | carbon source |
43766 | 16024 | D-mannose | - | carbon source |
43766 | 17924 | D-sorbitol | - | carbon source |
43766 | 30849 | L-arabinose | - | carbon source |
43766 | 62345 | L-rhamnose | - | carbon source |
43766 | 25115 | malate | - | carbon source |
43766 | 17306 | maltose | - | carbon source |
43766 | 28053 | melibiose | - | carbon source |
43766 | 506227 | N-acetylglucosamine | - | carbon source |
43766 | 18401 | phenylacetate | - | carbon source |
43766 | 53258 | sodium citrate | - | carbon source |
43766 | 17634 | D-glucose | + | builds acid from |
43766 | 16899 | D-mannitol | + | builds acid from |
43766 | 17268 | myo-inositol | + | builds acid from |
43766 | 17992 | sucrose | + | builds acid from |
43766 | 27689 | decanoate | + | carbon source |
43766 | 17634 | D-glucose | + | carbon source |
43766 | 16899 | D-mannitol | + | carbon source |
43766 | 17268 | myo-inositol | + | carbon source |
43766 | 32032 | potassium gluconate | + | carbon source |
43766 | 17992 | sucrose | + | carbon source |
43766 | 355715 | 4-nitrophenyl beta-D-galactopyranoside | + | hydrolysis |
43766 | casein | + | hydrolysis | |
43766 | 4853 | esculin | + | hydrolysis |
43766 | 16467 | L-arginine | + | hydrolysis |
43766 | 16828 | L-tryptophan | + | hydrolysis |
43766 | 28017 | starch | + | hydrolysis |
43766 | 17632 | nitrate | + | reduction |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
43766 | 15688 | acetoin | yes |
43766 | 16136 | hydrogen sulfide | yes |
metabolite tests
- @ref: 43766
- Chebi-ID: 15688
- metabolite: acetoin
- voges-proskauer-test: +
enzymes
@ref | value | activity | ec |
---|---|---|---|
43766 | cytochrome oxidase | - | 1.9.3.1 |
43766 | catalase | + | 1.11.1.6 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
24169 | soil | Andhra Pradesh province, Kurnool, limestone quarry | India | IND | Asia |
43766 | Soil sample | Kurnool, Andhra Pradesh province | India | IND | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_130992.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_840;97_65645;98_87656;99_130992&stattab=map
- Last taxonomy: Actinorectispora indica subclade
- 16S sequence: JF789453
- Sequence Identity:
- Total samples: 96
- soil counts: 56
- aquatic counts: 11
- animal counts: 25
- plant counts: 4
Sequence information
16S sequences
- @ref: 24169
- description: Actinorectispora indica strain YIM 75728 16S ribosomal RNA gene, partial sequence
- accession: JF789453
- length: 1445
- database: ena
- NCBI tax ID: 1034798
GC content
@ref | GC-content | method |
---|---|---|
43766 | 68 | high performance liquid chromatography (HPLC) |
24169 | 68.0 | high performance liquid chromatography (HPLC) |
External links
@ref: 24169
culture collection no.: DSM 45410, CCTCC AA 209065, YIM 75728
literature
- topic: Phylogeny
- Pubmed-ID: 26637823
- title: Actinorectispora indica gen. nov., sp. nov. isolated from soil, a member of the family Pseudonocardiaceae.
- authors: Quadri SR, Tian XP, Zhang J, Ruwaili JA, Hozzein WN, Agsar D, Li WJ, Dastager SG
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.000814
- year: 2015
Reference
@id | authors | title | doi/url | catalogue | journal | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
24169 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45410 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45410) | |||
43766 | Syed Raziuddin Quadri, Xin-Peng Tian, Jing Zhang, Jamal Al Ruwaili, Wael N. Hozzein, Dayanand Agsar, Wen-Jun Li, SyedG.Dastager | Actinorectispora indica gen. nov., sp. nov. isolated from soil, a member of the family Pseudonocardiaceae | 10.1099/ijsem.0.000814 | IJSEM 66: 939-945 2016 | 26637823 | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |