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Strain identifier

BacDive ID: 132360

Type strain: Yes

Species: Vibrio galatheae

Strain Designation: S2757

Strain history: <- S. Giubergia, Technical University of Denmark, Kgs. Lyngby; S2757 <- L. Gram, Technical University of Denmark

NCBI tax ID(s): 579748 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 24149

BacDive-ID: 132360

DSM-Number: 100497

keywords: genome sequence, Bacteria, facultative anaerobe, Gram-negative, motile, rod-shaped, colony-forming

description: Vibrio galatheae S2757 is a facultative anaerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from mussel collected in the sea.

NCBI tax id

  • NCBI tax id: 579748
  • Matching level: species

strain history: <- S. Giubergia, Technical University of Denmark, Kgs. Lyngby; S2757 <- L. Gram, Technical University of Denmark

doi: 10.13145/bacdive132360.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio galatheae
  • full scientific name: Vibrio galatheae Giubergia et al. 2016

@ref: 24149

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales, not validated

family: Vibrionaceae

genus: Vibrio

species: Vibrio galatheae

full scientific name: Vibrio galatheae Giubergia et al. 2016

strain designation: S2757

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityflagellum arrangementconfidence
44003negativerod-shapedyespolar
69480yes82.216
69480negative99.13

colony morphology

@refcolony sizecolony colorcolony shapeincubation periodmedium used
440032-4 mmbeigecircular2 daysmarine agar
440032-4 mmgreen2 daysthiosulfate-citrate-bile-sucrose

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
44003Marine agar (MA)yes
44003thiosulfate-citrate-bile-sucroseyes
24149BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
44003positivegrowth15-40
44003positiveoptimum30mesophilic
24149positivegrowth25mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 44003
  • oxygen tolerance: facultative anaerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 98.488

halophily

@refsaltgrowthtested relationconcentrationhalophily levelconfidence
44003NaClpositivegrowth0.5-8 %
44003NaClpositiveoptimum2-5 %
69480non-halophilic82.63

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
44003865372,2-dimethylsuccinic acid-assimilation
4400317754glycerol-assimilation
4400373804glycyl L-aspartic acid-assimilation
4400317203L-proline-assimilation
4400316857L-threonine-assimilation
4400328037N-acetylgalactosamine-assimilation
4400317992sucrose-assimilation
4400316947citrate+builds acid from
4400325115malate+builds acid from
4400317925alpha-D-glucose+carbon source
4400317665alpha-D-glucose 6-phosphate+carbon source
4400317057cellobiose+carbon source
4400315570D-alanine+carbon source
4400315824D-fructose+carbon source
440038391D-gluconate+carbon source
4400314314D-glucose 6-phosphate+carbon source
4400316899D-mannitol+carbon source
4400316024D-mannose+carbon source
4400317596inosine+carbon source
44003L-alanine 4-nitroanilide+carbon source
4400373786L-alanylglycine+carbon source
4400317196L-asparagine+carbon source
4400329991L-aspartate+carbon source
4400324996lactate+carbon source
4400317306maltose+carbon source
44003506227N-acetylglucosamine+carbon source
4400373784glycyl-l-glutamate+carbon source
4400317748thymidine+carbon source
4400327082trehalose+carbon source
440034853esculin+hydrolysis
4400317632nitrate+reduction
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836917634D-glucose+fermentation
6836927897tryptophan+energy source
6836917632nitrate+reduction

antibiotic resistance

  • @ref: 44003
  • ChEBI: 73908
  • metabolite: vibriostat
  • is antibiotic: yes
  • is sensitive: yes

metabolite production

@refChebi-IDmetaboliteproduction
4400335581indoleyes
6836935581indoleyes

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
44003catalase+1.11.1.6
44003cytochrome oxidase+1.9.3.1
44003alkaline phosphatase+3.1.3.1
44003esterase Lipase (C 8)+
44003leucine arylamidase+3.4.11.1
44003valine arylamidase+
44003cystine arylamidase+3.4.11.3
44003lipase-
44003acid phosphatase-3.1.3.2
68369cytochrome oxidase+1.9.3.1
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    44003C16:019.5
    44003C18:1ω7c and/or C18:1ω6c15.8
    44003C15:0 iso2.1
    44003C16:0 iso3.7
    44003C17:0 iso4
    44003one or more of C16:1ω7c, C16:1ω6c and/34.7
  • type of FA analysis: whole cell analysis
  • incubation medium: marine agar
  • agar/liquid: agar
  • incubation temperature: 25
  • incubation time: 1
  • system: MIS MIDI

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
24149++++-++++-+++++--+-++
24149+++--+-++-+++++--+-++

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
24149mussel collected in the seaSolomon SeaSolomon IslandsSLBAustralia and Oceania
44003a musselSolomon SeaSolomon IslandsSLBAustralia and Oceania

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Host#Invertebrates (Other)#Mollusca

Safety information

risk assessment

  • @ref: 24149
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Vibrio galatheae S2757GCA_000967545contigncbi579748
66792Vibrio galatheae S27572791355472draftimg579748

GC content

@refGC-contentmethod
4400345.3genome sequence analysis
2414945.3sequence analysis

External links

@ref: 24149

culture collection no.: DSM 100497, LMG 28895

literature

  • topic: Phylogeny
  • Pubmed-ID: 26514698
  • title: Vibrio galatheae sp. nov., a member of the family Vibrionaceae isolated from a mussel.
  • authors: Giubergia S, Machado H, Valentina Mateiu R, Gram L
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000723
  • year: 2015
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, Bivalvia/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Melanesia, Molecular Sequence Data, Multilocus Sequence Typing, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vibrio/*classification/genetics/isolation & purification
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24149Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100497Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100497)
44003Sonia Giubergia, Henrique Machado, Ramona Valentina Mateiu, Lone GramVibrio galatheae sp. nov., a member of the family Vibrionaceae isolated from a mussel10.1099/ijsem.0.000723IJSEM 66: 347-352 201626514698
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes