Strain identifier

BacDive ID: 132360

Type strain: Yes

Species: Vibrio galatheae

Strain Designation: S2757

Strain history: <- S. Giubergia, Technical University of Denmark, Kgs. Lyngby; S2757 <- L. Gram, Technical University of Denmark

NCBI tax ID(s): 579748 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 24149

BacDive-ID: 132360

DSM-Number: 100497

keywords: genome sequence, Bacteria, facultative anaerobe, Gram-negative, motile, rod-shaped, colony-forming

description: Vibrio galatheae S2757 is a facultative anaerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from mussel collected in the sea.

NCBI tax id

  • NCBI tax id: 579748
  • Matching level: species

strain history

  • @ref: 24149
  • history: <- S. Giubergia, Technical University of Denmark, Kgs. Lyngby; S2757 <- L. Gram, Technical University of Denmark

doi: 10.13145/bacdive132360.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio galatheae
  • full scientific name: Vibrio galatheae Giubergia et al. 2016

@ref: 24149

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales, not validated

family: Vibrionaceae

genus: Vibrio

species: Vibrio galatheae

full scientific name: Vibrio galatheae Giubergia et al. 2016

strain designation: S2757

type strain: yes

Morphology

cell morphology

  • @ref: 44003
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: polar

colony morphology

@refcolony sizecolony colorcolony shapeincubation periodmedium used
440032-4 mmbeigecircular2 daysmarine agar
440032-4 mmgreen2 daysthiosulfate-citrate-bile-sucrose

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
44003Marine agar (MA)yes
44003thiosulfate-citrate-bile-sucroseyes
24149BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
44003positivegrowth15-40
44003positiveoptimum30mesophilic
24149positivegrowth25mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 44003
  • oxygen tolerance: facultative anaerobe

halophily

@refsaltgrowthtested relationconcentration
44003NaClpositivegrowth0.5-8 %
44003NaClpositiveoptimum2-5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
44003865372,2-dimethylsuccinic acid-assimilation
4400317754glycerol-assimilation
4400373804glycyl L-aspartic acid-assimilation
4400317203L-proline-assimilation
4400316857L-threonine-assimilation
4400328037N-acetylgalactosamine-assimilation
4400317992sucrose-assimilation
4400316947citrate+builds acid from
4400325115malate+builds acid from
4400317925alpha-D-glucose+carbon source
4400317665alpha-D-glucose 6-phosphate+carbon source
4400317057cellobiose+carbon source
4400315570D-alanine+carbon source
4400315824D-fructose+carbon source
440038391D-gluconate+carbon source
4400314314D-glucose 6-phosphate+carbon source
4400316899D-mannitol+carbon source
4400316024D-mannose+carbon source
4400317596inosine+carbon source
44003L-alanine 4-nitroanilide+carbon source
4400373786L-alanylglycine+carbon source
4400317196L-asparagine+carbon source
4400329991L-aspartate+carbon source
4400324996lactate+carbon source
4400317306maltose+carbon source
44003506227N-acetylglucosamine+carbon source
4400373784glycyl-l-glutamate+carbon source
4400317748thymidine+carbon source
4400327082trehalose+carbon source
440034853esculin+hydrolysis
4400317632nitrate+reduction
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836917634D-glucose+fermentation
6836927897tryptophan+energy source
6836917632nitrate+reduction

antibiotic resistance

  • @ref: 44003
  • ChEBI: 73908
  • metabolite: vibriostat
  • is antibiotic: yes
  • is sensitive: yes

metabolite production

@refChebi-IDmetaboliteproduction
4400335581indoleyes
6836935581indoleyes

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
44003catalase+1.11.1.6
44003cytochrome oxidase+1.9.3.1
44003alkaline phosphatase+3.1.3.1
44003esterase Lipase (C 8)+
44003leucine arylamidase+3.4.11.1
44003valine arylamidase+
44003cystine arylamidase+3.4.11.3
44003lipase-
44003acid phosphatase-3.1.3.2
68369cytochrome oxidase+1.9.3.1
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    44003C16:019.5
    44003C18:1ω7c and/or C18:1ω6c15.8
    44003C15:0 iso2.1
    44003C16:0 iso3.7
    44003C17:0 iso4
    44003one or more of C16:1ω7c, C16:1ω6c and/34.7
  • type of FA analysis: whole cell analysis
  • incubation medium: marine agar
  • agar/liquid: agar
  • incubation temperature: 25
  • incubation time: 1
  • system: MIS MIDI

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
24149++++-++++-+++++--+-++
24149+++--+-++-+++++--+-++

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
24149mussel collected in the seaSolomon SeaSolomon IslandsSLBAustralia and Oceania
44003a musselSolomon SeaSolomon IslandsSLBAustralia and Oceania

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Host#Invertebrates (Other)#Mollusca

Safety information

risk assessment

  • @ref: 24149
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Vibrio galatheae S2757GCA_000967545contigncbi579748
66792Vibrio galatheae S27572791355472draftimg579748

GC content

@refGC-contentmethod
4400345.3genome sequence analysis
2414945.3sequence analysis

External links

@ref: 24149

culture collection no.: DSM 100497, LMG 28895

straininfo link

  • @ref: 90706
  • straininfo: 397178

literature

  • topic: Phylogeny
  • Pubmed-ID: 26514698
  • title: Vibrio galatheae sp. nov., a member of the family Vibrionaceae isolated from a mussel.
  • authors: Giubergia S, Machado H, Valentina Mateiu R, Gram L
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000723
  • year: 2015
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, Bivalvia/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Melanesia, Molecular Sequence Data, Multilocus Sequence Typing, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vibrio/*classification/genetics/isolation & purification
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24149Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100497Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100497)
44003Sonia Giubergia, Henrique Machado, Ramona Valentina Mateiu, Lone GramVibrio galatheae sp. nov., a member of the family Vibrionaceae isolated from a mussel10.1099/ijsem.0.000723IJSEM 66: 347-352 201626514698
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
90706Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397178.1