Strain identifier

BacDive ID: 132343

Type strain: Yes

Species: Nocardiopsis ansamitocini

Strain history: <- Y.-G. Zhang, Xinjiang Institute of Ecology and Geography, CAS; EGI 80425

NCBI tax ID(s): 1670832 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 24132

BacDive-ID: 132343

DSM-Number: 103990

keywords: 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive

description: Nocardiopsis ansamitocini DSM 103990 is an aerobe, spore-forming, Gram-positive bacterium that builds a substrate mycelium and was isolated from desert soil.

NCBI tax id

  • NCBI tax id: 1670832
  • Matching level: species

strain history

  • @ref: 24132
  • history: <- Y.-G. Zhang, Xinjiang Institute of Ecology and Geography, CAS; EGI 80425

doi: 10.13145/bacdive132343.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Nocardiopsidaceae
  • genus: Nocardiopsis
  • species: Nocardiopsis ansamitocini
  • full scientific name: Nocardiopsis ansamitocini Zhang et al. 2016

@ref: 24132

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiopsaceae

genus: Nocardiopsis

species: Nocardiopsis ansamitocini

full scientific name: Nocardiopsis ansamitocini Zhang et al. 2016

type strain: yes

Morphology

cell morphology

  • @ref: 44063
  • gram stain: positive

multicellular morphology

@refforms multicellular complexcomplex namecomplex colorfurther descriptionmedium name
44063yessubstrate myceliumwhite-orange-yellownon-fragmented
44063yesaerial myceliumwhiteISP2
44063yesaerial myceliumwhiteISP3
44063yesaerial myceliumwhitenutrient agar
44063yesaerial myceliumwhitepotato-dextrose agar
44063noaerial myceliumwhiteISP4
44063noaerial myceliumwhiteISP5
44063noaerial myceliumwhiteCzapek's agar
44063noaerial myceliumwhiteGauze No. 1 agar

multimedia

  • @ref: 24132
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_103990.jpg
  • caption: Medium 553 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
44063Czapek's agaryes
44063Gauze No. 1 agaryes
44063ISP2yes
44063ISP3yes
44063ISP4yes
44063ISP5yes
44063Nutrient agar (NA)yes
44063potato-dextrose agaryes
24132GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
44063positivegrowth15-50
44063positiveoptimum30mesophilic
24132positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
44063positivegrowth6.0-10.0alkaliphile
44063positiveoptimum8.0-9.0

Physiology and metabolism

oxygen tolerance

  • @ref: 44063
  • oxygen tolerance: aerobe

spore formation

  • @ref: 44063
  • spore description: rod-like spore chains
  • type of spore: spore
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentrationhalophily level
44063NaClpositivegrowth0-12 %(w/v)
44063NaClpositiveoptimum0 %(w/v)non-halophilic

observation

  • @ref: 44063
  • observation: production of ansamitocin P-3

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4406317151xylitol-carbon source
4406317754glycerol-carbon source
4406317992sucrose-carbon source
44063casein-hydrolysis
4406328017starch-hydrolysis
4406353425tween 60-hydrolysis
4406317196L-asparagine-nitrogen source
4406329991L-aspartate-nitrogen source
4406317561L-cysteine-nitrogen source
4406315971L-histidine-nitrogen source
4406316828L-tryptophan-nitrogen source
4406317895L-tyrosine-nitrogen source
4406317632nitrate-reduction
4406317108D-arabinose+carbon source
4406315824D-fructose+carbon source
4406312936D-galactose+carbon source
4406317634D-glucose+carbon source
4406316024D-mannose+carbon source
4406316988D-ribose+carbon source
4406317924D-sorbitol+carbon source
4406365327D-xylose+carbon source
4406362345L-rhamnose+carbon source
4406317266L-sorbose+carbon source
4406317716lactose+carbon source
4406317306maltose+carbon source
4406317268myo-inositol+carbon source
4406317272propionate+carbon source
4406316634raffinose+carbon source
4406353258sodium citrate+carbon source
4406327082trehalose+carbon source
4406362968cellulose+hydrolysis
4406353424tween 20+hydrolysis
4406353423tween 40+hydrolysis
4406353426tween 80+hydrolysis
4406316449dl-alanine+nitrogen source
4406316467L-arginine+nitrogen source
4406329985L-glutamate+nitrogen source
4406317191L-isoleucine+nitrogen source
4406318019L-lysine+nitrogen source
4406316643L-methionine+nitrogen source
4406317295L-phenylalanine+nitrogen source
4406317115L-serine+nitrogen source
4406316857L-threonine+nitrogen source
4406316414L-valine+nitrogen source

metabolite production

  • @ref: 44063
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: no

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    4406310-Methyl C17:01.97
    4406310-Methyl C18:0-TBSA6.53
    44063C15:0 anteiso1.81
    44063C17:0 anteiso25.66
    44063C19:0 anteiso0.65
    44063C14:00.17
    44063C16:02.39
    44063C16:1ω7c / C16:1ω6c1.44
    44063C17:00.31
    44063C17:0 2OH0.38
    44063C17:1ω8c2.14
    44063C18:03.98
    44063C18:1ω7c / C18:1ω6c0.15
    44063C18:1ω9c20.13
    44063C14:0 iso0.4
    44063C15:0 iso1.03
    44063C16:0 iso20.66
    44063C17:0 iso6.68
    44063iso-C17:1-I / anteiso-C17:1-B0.31
    44063iso-C17:1ω9c / 10-methyl-C16:00.52
    44063C18:0 iso1.68
    44063C19:0 iso0.61
    44063unkoωn 18.846/C19:1ω6c or C19:1ω0.41
  • type of FA analysis: whole cell analysis
  • incubation medium: TSB
  • incubation temperature: 30
  • incubation time: 4
  • incubation pH: 9
  • library/peak naming table: TSBA6
  • system: MIS MIDI
  • method/protocol: Sasser, 1990

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentenrichment cultureenrichment culture compositionenrichment culture durationenrichment culture temperature
24132desert soilXinjiang Province, KaramayChinaCHNAsia
44063saline-alkali soil sampleKaramay, Xinjiang ProvinceChinaCHNAsiaISP2adjusted to pH 10 with NaOH28 days30

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Desert
#Condition#Alkaline
#Condition#Saline
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 24132
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24132
  • description: Nocardiopsis ansamitocini strain EGI 80425 16S ribosomal RNA gene, partial sequence
  • accession: KR605109
  • length: 1524
  • database: ena
  • NCBI tax ID: 1670832

GC content

  • @ref: 24132
  • GC-content: 70.2
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 24132

culture collection no.: DSM 103990, CGMCC 9969, KCTC 39605, EGI 80425

straininfo link

  • @ref: 90689
  • straininfo: 406421

literature

  • topic: Phylogeny
  • Pubmed-ID: 26486850
  • title: Nocardiopsis ansamitocini sp. nov., a new producer of ansamitocin P-3 of the genus Nocardiopsis.
  • authors: Zhang YG, Liu Q, Wang HF, Park DJ, Guo JW, Kim CJ, Zhang YM, Li WJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000703
  • year: 2015
  • mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Maytansine/*analogs & derivatives/biosynthesis, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24132Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-103990Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103990)
44063Yong-Guang Zhang, Qing Liu, Hong-Fei Wang, Dong-Jin Park, Jian-Wei Guo, Chang-Jin Kim, Yuan-Ming Zhang and Wen-Jun LiNocardiopsis ansamitocini sp. nov., a new producer of ansamitocin P-3 of the genus Nocardiopsis10.1099/ijsem.0.000703IJSEM 66: 230-235 201626486850
90689Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID406421.1