Strain identifier
BacDive ID: 132330
Type strain: 
Species: Pseudolabrys sp.
Strain Designation: Root1462
Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root1462 <- Y. Bai
NCBI tax ID(s): 1960880 (species)
version 8.1 (current version)
General
@ref: 24119
BacDive-ID: 132330
DSM-Number: 102501
keywords: genome sequence, Bacteria, mesophilic
description: Pseudolabrys sp. Root1462 is a mesophilic bacterium that was isolated from roots of Arabidopsis thaliana ecotype Shakdara .
NCBI tax id
- NCBI tax id: 1960880
- Matching level: species
strain history
- @ref: 24119
- history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root1462 <- Y. Bai
doi: 10.13145/bacdive132330.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Nitrobacteraceae
- genus: Pseudolabrys
- species: Pseudolabrys sp.
- full scientific name: Pseudolabrys Kämpfer et al. 2006
@ref: 24119
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Nitrobacteraceae
genus: Pseudolabrys
species: Pseudolabrys sp.
full scientific name: Pseudolabrys sp.
strain designation: Root1462
type strain: no
Culture and growth conditions
culture medium
- @ref: 24119
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
- @ref: 24119
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 24119
- sample type: roots of Arabidopsis thaliana ecotype Shakdara (Sha)
- host species: Arabidopsis thaliana
- geographic location: Cologne (50.958N 6.856E)
- country: Germany
- origin.country: DEU
- continent: Europe
- latitude: 50.958
- longitude: 6.856
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Root (Rhizome) |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pseudolabrys sp. Root1462 | GCA_001426945 | scaffold | ncbi | 1736466 |
| 66792 | Pseudolabrys sp. Root1462 | 1736466.8 | wgs | patric | 1736466 |
| 66792 | Pseudolabrys sp. Root1462 | 2643221547 | draft | img | 1736466 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 72.435 | no |
| gram-positive | no | 98.761 | no |
| anaerobic | no | 95.572 | no |
| aerobic | yes | 81.811 | no |
| halophile | no | 85.32 | no |
| spore-forming | no | 96.129 | no |
| thermophile | no | 96.955 | yes |
| glucose-util | yes | 72.668 | no |
| motile | yes | 74.561 | no |
| glucose-ferment | no | 91.585 | no |
External links
@ref: 24119
culture collection no.: DSM 102501
straininfo link
- @ref: 90677
- straininfo: 402390
literature
- topic: Metabolism
- Pubmed-ID: 34788856
- title: A procedure for removal of cyanuric acid in swimming pools using a cell-free thermostable cyanuric acid hydrolase.
- authors: Guo F, McAuliffe JC, Bongiorni C, Latone JA, Pepsin MJ, Chow MS, Dhaliwal RS, Hoffmann KM, Brazil BT, Heng MH, Robinson SL, Wackett LP, Whited GM
- journal: J Ind Microbiol Biotechnol
- DOI: 10.1093/jimb/kuab084
- year: 2022
- mesh: *Biuret/metabolism, Chlorine, Hydrolases/genetics/metabolism, Hypochlorous Acid, *Swimming Pools, Triazines
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24119 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102501 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102501) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 90677 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402390.1 |