Strain identifier

BacDive ID: 132294

Type strain: Yes

Species: Thermocrinis jamiesonii

Strain history: J. Dodsworth and B. P. Hedlund GBS1.

NCBI tax ID(s): 1302351 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 24083

BacDive-ID: 132294

DSM-Number: 27162

keywords: genome sequence, Bacteria, hyperthermophilic

description: Thermocrinis jamiesonii DSM 27162 is a hyperthermophilic bacterium that was isolated from water column of a geothermal spring.

NCBI tax id

  • NCBI tax id: 1302351
  • Matching level: species

strain history

@refhistory
24083<- B. Hedlund, School Life Sci., Univ. Nevada, Las Vegas, USA; GBS1 <- J. Dodsworth
67770J. Dodsworth and B. P. Hedlund GBS1.

doi: 10.13145/bacdive132294.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/aquificota
  • domain: Bacteria
  • phylum: Aquificota
  • class: Aquificia
  • order: Aquificales
  • family: Aquificaceae
  • genus: Thermocrinis
  • species: Thermocrinis jamiesonii
  • full scientific name: Thermocrinis jamiesonii Dodsworth et al. 2015

@ref: 24083

domain: Bacteria

phylum: Aquificae

class: Aquificae

order: Aquificales

family: Aquificaceae

genus: Thermocrinis

species: Thermocrinis jamiesonii

full scientific name: Thermocrinis jamiesonii Dodsworth et al. 2015

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 24083
  • name: GBS SALTS MODIFIED FOR THERMICRINIS JAMIESONII (DSMZ Medium 1486)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1486
  • composition: Name: GBS salts modified for Thermocrinis jamiesonii (DSMZ Medium 1486) Composition: NaCl 3.0 g/l NaH2PO4 1.38 g/l Sodium thiosulfate pentahydrate 0.496372 g/l Na2SO4 0.3 g/l Sodium acetate trihydrate 0.27216 g/l KCl 0.15 g/l MgSO4 x 7 H2O 0.123 g/l NH4Cl 0.107 g/l Na2-EDTA 0.0185 g/l CaCl2 x 2 H2O 0.015 g/l FeSO4 x 7 H2O 0.0055 g/l MnCl2 x 4 H2O 0.000492 g/l H3BO3 0.000155 g/l ZnSO4 x 7 H2O 0.000144 g/l Na2MoO4 x 2 H2O 0.000121 g/l CoCl2 x 6 H2O 0.000119 g/l CuCl2 x 2 H2O 8.6e-05 g/l Sodium bicarbonate Distilled water

culture temp

@refgrowthtypetemperaturerange
24083positivegrowth80hyperthermophilic
67770positivegrowth80hyperthermophilic

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
24083water column of a geothermal springNevada, near Gerlach, Great Boiling Spring, north side of the source pool, site AUSAUSANorth America
67770Water column of Great Boiling SpringNVUSAUSANorth America

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Thermal spring
#Condition#Thermophilic (>45°C)

Safety information

risk assessment

  • @ref: 24083
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

  • @ref: 67770
  • description: Thermocrinis jamiesonii GBS1
  • accession: GCA_000702425
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 1302351

GC content

@refGC-contentmethod
2408341.3sequence analysis
6777041.3genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes81.795no
flagellatedno92.561no
gram-positiveno99.556no
anaerobicno57.255no
halophileno83.381no
spore-formingno96.952no
thermophileyes100no
glucose-utilyes64.775no
aerobicno95.01no
glucose-fermentno83.817no

External links

@ref: 24083

culture collection no.: DSM 27162, JCM 19133, GBS 1

straininfo link

  • @ref: 90641
  • straininfo: 402933

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny26419502Thermocrinis jamiesonii sp. nov., a thiosulfate-oxidizing, autotropic thermophile isolated from a geothermal spring.Dodsworth JA, Ong JC, Williams AJ, Dohnalkova AC, Hedlund BPInt J Syst Evol Microbiol10.1099/ijsem.0.0006472015Bacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hot Springs/*microbiology, Molecular Sequence Data, Nevada, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thiosulfates/*metabolismGenetics
Genetics27795267High-Quality Draft Genome Sequence of Thermocrinis jamiesonii GBS1T Isolated from Great Boiling Spring, Nevada.Ganji R, Murugapiran SK, Ong JC, Manoharan N, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TB, Ngan CY, Daum C, Duffy K, Shapiro N, Markowitz V, Ivanova N, Kyrpides N, Woyke T, Dodsworth JA, Hedlund BPGenome Announc10.1128/genomeA.01112-162016Phylogeny

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24083Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27162Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27162)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
90641Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402933.1