Strain identifier
BacDive ID: 132294
Type strain:
Species: Thermocrinis jamiesonii
Strain history: J. Dodsworth and B. P. Hedlund GBS1.
NCBI tax ID(s): 1302351 (species)
version 8.1 (current version)
General
@ref: 24083
BacDive-ID: 132294
DSM-Number: 27162
keywords: genome sequence, Bacteria, hyperthermophilic
description: Thermocrinis jamiesonii DSM 27162 is a hyperthermophilic bacterium that was isolated from water column of a geothermal spring.
NCBI tax id
- NCBI tax id: 1302351
- Matching level: species
strain history
@ref | history |
---|---|
24083 | <- B. Hedlund, School Life Sci., Univ. Nevada, Las Vegas, USA; GBS1 <- J. Dodsworth |
67770 | J. Dodsworth and B. P. Hedlund GBS1. |
doi: 10.13145/bacdive132294.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/aquificota
- domain: Bacteria
- phylum: Aquificota
- class: Aquificia
- order: Aquificales
- family: Aquificaceae
- genus: Thermocrinis
- species: Thermocrinis jamiesonii
- full scientific name: Thermocrinis jamiesonii Dodsworth et al. 2015
@ref: 24083
domain: Bacteria
phylum: Aquificae
class: Aquificae
order: Aquificales
family: Aquificaceae
genus: Thermocrinis
species: Thermocrinis jamiesonii
full scientific name: Thermocrinis jamiesonii Dodsworth et al. 2015
type strain: yes
Culture and growth conditions
culture medium
- @ref: 24083
- name: GBS SALTS MODIFIED FOR THERMICRINIS JAMIESONII (DSMZ Medium 1486)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1486
- composition: Name: GBS salts modified for Thermocrinis jamiesonii (DSMZ Medium 1486) Composition: NaCl 3.0 g/l NaH2PO4 1.38 g/l Sodium thiosulfate pentahydrate 0.496372 g/l Na2SO4 0.3 g/l Sodium acetate trihydrate 0.27216 g/l KCl 0.15 g/l MgSO4 x 7 H2O 0.123 g/l NH4Cl 0.107 g/l Na2-EDTA 0.0185 g/l CaCl2 x 2 H2O 0.015 g/l FeSO4 x 7 H2O 0.0055 g/l MnCl2 x 4 H2O 0.000492 g/l H3BO3 0.000155 g/l ZnSO4 x 7 H2O 0.000144 g/l Na2MoO4 x 2 H2O 0.000121 g/l CoCl2 x 6 H2O 0.000119 g/l CuCl2 x 2 H2O 8.6e-05 g/l Sodium bicarbonate Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
24083 | positive | growth | 80 | hyperthermophilic |
67770 | positive | growth | 80 | hyperthermophilic |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
24083 | water column of a geothermal spring | Nevada, near Gerlach, Great Boiling Spring, north side of the source pool, site A | USA | USA | North America |
67770 | Water column of Great Boiling Spring | NV | USA | USA | North America |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Thermal spring |
#Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 24083
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 67770
- description: Thermocrinis jamiesonii GBS1
- accession: GCA_000702425
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 1302351
GC content
@ref | GC-content | method |
---|---|---|
24083 | 41.3 | sequence analysis |
67770 | 41.3 | genome sequence analysis |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 81.795 | no |
flagellated | no | 92.561 | no |
gram-positive | no | 99.556 | no |
anaerobic | no | 57.255 | no |
halophile | no | 83.381 | no |
spore-forming | no | 96.952 | no |
thermophile | yes | 100 | no |
glucose-util | yes | 64.775 | no |
aerobic | no | 95.01 | no |
glucose-ferment | no | 83.817 | no |
External links
@ref: 24083
culture collection no.: DSM 27162, JCM 19133, GBS 1
straininfo link
- @ref: 90641
- straininfo: 402933
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 26419502 | Thermocrinis jamiesonii sp. nov., a thiosulfate-oxidizing, autotropic thermophile isolated from a geothermal spring. | Dodsworth JA, Ong JC, Williams AJ, Dohnalkova AC, Hedlund BP | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000647 | 2015 | Bacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hot Springs/*microbiology, Molecular Sequence Data, Nevada, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thiosulfates/*metabolism | Genetics |
Genetics | 27795267 | High-Quality Draft Genome Sequence of Thermocrinis jamiesonii GBS1T Isolated from Great Boiling Spring, Nevada. | Ganji R, Murugapiran SK, Ong JC, Manoharan N, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TB, Ngan CY, Daum C, Duffy K, Shapiro N, Markowitz V, Ivanova N, Kyrpides N, Woyke T, Dodsworth JA, Hedlund BP | Genome Announc | 10.1128/genomeA.01112-16 | 2016 | Phylogeny |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
24083 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27162 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27162) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
90641 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402933.1 |