Strain identifier

BacDive ID: 132289

Type strain: No

Species: Weissella thailandensis

Strain Designation: FOL01

Strain history: J.-H. Lee; Kyung Hee Univ., South Korea; FOL01.

NCBI tax ID(s): 1631871 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 24078

BacDive-ID: 132289

DSM-Number: 103409

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Weissella thailandensis FOL01 is a mesophilic bacterium that was isolated from jogae jeotgal, traditional Korean fermented seafood.

NCBI tax id

  • NCBI tax id: 1631871
  • Matching level: species

strain history

@refhistory
24078<- JCM Riken BioResource Center, Tsukuba, Japan; JCM 30580 <- J.-H. Lee; Kyung Hee Univ., South Korea; FOL01
67770J.-H. Lee; Kyung Hee Univ., South Korea; FOL01.

doi: 10.13145/bacdive132289.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Weissella
  • species: Weissella thailandensis
  • full scientific name: Weissella thailandensis Tanasupawat et al. 2000
  • synonyms

    • @ref: 20215
    • synonym: Weissella jogaejeotgali

@ref: 24078

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Leuconostocaceae

genus: Weissella

species: Weissella thailandensis

full scientific name: Weissella thailandensis Tanasupawat et al. 2000

strain designation: FOL01

type strain: no

Culture and growth conditions

culture medium

  • @ref: 24078
  • name: MRS MEDIUM (DSMZ Medium 11)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/11
  • composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
24078positivegrowth37mesophilic
67770positivegrowth37mesophilic

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
24078jogae jeotgal, traditional Korean fermented seafoodIncheonRepublic of KoreaKORAsia
67770Jogae jeotgal, a Korean traditional fermented seafoodIncheonRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Seafood
#Engineered#Food production#Fermented

taxonmaps

  • @ref: 69479
  • File name: preview.99_867.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_155;96_519;97_597;98_686;99_867&stattab=map
  • Last taxonomy: Weissella
  • 16S sequence: KP027016
  • Sequence Identity:
  • Total samples: 14915
  • soil counts: 1853
  • aquatic counts: 1125
  • animal counts: 11172
  • plant counts: 765

Safety information

risk assessment

  • @ref: 24078
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24078
  • description: Weissella jogaejeotgali strain FOL01 16S ribosomal RNA (rrnA) gene, partial sequence
  • accession: KP027016
  • length: 1336
  • database: ena
  • NCBI tax ID: 1631871

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Weissella jogaejeotgali strain FOL011631871.4completepatric1631871
66792Weissella jogaejeotgali strain FOL011631871.5plasmidpatric1631871

GC content

@refGC-contentmethod
2407839.6fluorimetric
6777039.6thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno96.253no
gram-positiveyes97.768no
anaerobicno95.597no
aerobicno93.178no
halophileyes96.253no
spore-formingno96.81no
glucose-utilyes86.691no
flagellatedno98.568no
thermophileno99.799yes
glucose-fermentyes90.884no

External links

@ref: 24078

culture collection no.: DSM 103409, JCM 30580, KCCM 43128, KACC 91955P, LMG 30916

straininfo link

  • @ref: 90636
  • straininfo: 398060

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny26410078Weissella jogaejeotgali sp. nov., isolated from jogae jeotgal, a traditional Korean fermented seafood.Lee SH, Ku HJ, Ahn MJ, Hong JS, Lee SH, Shin H, Lee KC, Lee JS, Ryu S, Jeon CO, Lee JHInt J Syst Evol Microbiol10.1099/ijsem.0.0006312015Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermentation, *Food Microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seafood/*microbiology, Sequence Analysis, DNA, Weissella/*classification/genetics/isolation & purificationBiotechnology
Biotechnology28274098Genomic Insights of Weissella jogaejeotgali FOL01(T) Reveals Its Food Fermentation Ability and Human Gut Adaptive Potential for Probiotic Applications in Food Industries.Ku HJ, Kim YT, Lee JHJ Microbiol Biotechnol10.4014/jmb.1702.020542017Bacterial Adhesion, Bacterial Typing Techniques, Base Composition, Base Sequence, DNA, Bacterial/genetics, *Fermentation, *Food Industry, *Food Microbiology, *Genome, Bacterial, Humans, Hydrogen-Ion Concentration, Mucins, Osmotic Pressure/physiology, Plasmids/analysis, *Probiotics, RNA, Bacterial/analysis, Republic of Korea, Sequence Analysis, DNA, Stress, Physiological, Weissella/*geneticsGenetics
Phylogeny31663499Genome-based reclassification of Weissella jogaejeotgali as a later heterotypic synonym of Weissella thailandensis.Kwak MJ, Choi SB, Kim BY, Chun JInt J Syst Evol Microbiol10.1099/ijsem.0.0033152019Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermented Foods/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thailand, Weissella/*classificationTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24078Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-103409Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103409)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
90636Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID398060.1