Strain identifier
BacDive ID: 132289
Type strain:
Species: Weissella thailandensis
Strain Designation: FOL01
Strain history: J.-H. Lee; Kyung Hee Univ., South Korea; FOL01.
NCBI tax ID(s): 1631871 (species)
General
@ref: 24078
BacDive-ID: 132289
DSM-Number: 103409
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Weissella thailandensis FOL01 is a mesophilic bacterium that was isolated from jogae jeotgal, traditional Korean fermented seafood.
NCBI tax id
- NCBI tax id: 1631871
- Matching level: species
strain history
@ref | history |
---|---|
24078 | <- JCM Riken BioResource Center, Tsukuba, Japan; JCM 30580 <- J.-H. Lee; Kyung Hee Univ., South Korea; FOL01 |
67770 | J.-H. Lee; Kyung Hee Univ., South Korea; FOL01. |
doi: 10.13145/bacdive132289.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Weissella
- species: Weissella thailandensis
- full scientific name: Weissella thailandensis Tanasupawat et al. 2000
synonyms
- @ref: 20215
- synonym: Weissella jogaejeotgali
@ref: 24078
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Leuconostocaceae
genus: Weissella
species: Weissella thailandensis
full scientific name: Weissella thailandensis Tanasupawat et al. 2000
strain designation: FOL01
type strain: no
Culture and growth conditions
culture medium
- @ref: 24078
- name: MRS MEDIUM (DSMZ Medium 11)
- growth: yes
- link: https://mediadive.dsmz.de/medium/11
- composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
24078 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
24078 | jogae jeotgal, traditional Korean fermented seafood | Incheon | Republic of Korea | KOR | Asia |
67770 | Jogae jeotgal, a Korean traditional fermented seafood | Incheon | Republic of Korea | KOR | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Food production | #Seafood |
#Engineered | #Food production | #Fermented |
taxonmaps
- @ref: 69479
- File name: preview.99_867.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_155;96_519;97_597;98_686;99_867&stattab=map
- Last taxonomy: Weissella
- 16S sequence: KP027016
- Sequence Identity:
- Total samples: 14915
- soil counts: 1853
- aquatic counts: 1125
- animal counts: 11172
- plant counts: 765
Safety information
risk assessment
- @ref: 24078
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24078
- description: Weissella jogaejeotgali strain FOL01 16S ribosomal RNA (rrnA) gene, partial sequence
- accession: KP027016
- length: 1336
- database: ena
- NCBI tax ID: 1631871
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Weissella jogaejeotgali strain FOL01 | 1631871.4 | complete | patric | 1631871 |
66792 | Weissella jogaejeotgali strain FOL01 | 1631871.5 | plasmid | patric | 1631871 |
GC content
@ref | GC-content | method |
---|---|---|
24078 | 39.6 | fluorimetric |
67770 | 39.6 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 96.253 | no |
gram-positive | yes | 97.768 | no |
anaerobic | no | 95.597 | no |
aerobic | no | 93.178 | no |
halophile | yes | 96.253 | no |
spore-forming | no | 96.81 | no |
glucose-util | yes | 86.691 | no |
flagellated | no | 98.568 | no |
thermophile | no | 99.799 | yes |
glucose-ferment | yes | 90.884 | no |
External links
@ref: 24078
culture collection no.: DSM 103409, JCM 30580, KCCM 43128, KACC 91955P, LMG 30916
straininfo link
- @ref: 90636
- straininfo: 398060
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 26410078 | Weissella jogaejeotgali sp. nov., isolated from jogae jeotgal, a traditional Korean fermented seafood. | Lee SH, Ku HJ, Ahn MJ, Hong JS, Lee SH, Shin H, Lee KC, Lee JS, Ryu S, Jeon CO, Lee JH | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000631 | 2015 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermentation, *Food Microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seafood/*microbiology, Sequence Analysis, DNA, Weissella/*classification/genetics/isolation & purification | Biotechnology |
Biotechnology | 28274098 | Genomic Insights of Weissella jogaejeotgali FOL01(T) Reveals Its Food Fermentation Ability and Human Gut Adaptive Potential for Probiotic Applications in Food Industries. | Ku HJ, Kim YT, Lee JH | J Microbiol Biotechnol | 10.4014/jmb.1702.02054 | 2017 | Bacterial Adhesion, Bacterial Typing Techniques, Base Composition, Base Sequence, DNA, Bacterial/genetics, *Fermentation, *Food Industry, *Food Microbiology, *Genome, Bacterial, Humans, Hydrogen-Ion Concentration, Mucins, Osmotic Pressure/physiology, Plasmids/analysis, *Probiotics, RNA, Bacterial/analysis, Republic of Korea, Sequence Analysis, DNA, Stress, Physiological, Weissella/*genetics | Genetics |
Phylogeny | 31663499 | Genome-based reclassification of Weissella jogaejeotgali as a later heterotypic synonym of Weissella thailandensis. | Kwak MJ, Choi SB, Kim BY, Chun J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003315 | 2019 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermented Foods/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thailand, Weissella/*classification | Transcriptome |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
24078 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103409 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103409) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
90636 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398060.1 |