Strain identifier
BacDive ID: 132287
Type strain: 
Species: Aeromicrobium camelliae
Strain Designation: YS17
Strain history: L. Niu; Shanghai Univ., China; YS17.
NCBI tax ID(s): 1538144 (species)
version 9 (current version)
General
@ref: 24076
BacDive-ID: 132287
DSM-Number: 103358
keywords: genome sequence, 16S sequence, Bacteria
description: Aeromicrobium camelliae YS17 is a bacterium that was isolated from Ripened Pu'er tea.
NCBI tax id
- NCBI tax id: 1538144
- Matching level: species
strain history
| @ref | history |
|---|---|
| 24076 | <- JCM, Riken BioResource Center, Tsukuba, Japan; JCM 30592 <- L. Niu, Shanghai University, P. R. China; YS17 |
| 67770 | L. Niu; Shanghai Univ., China; YS17. |
doi: 10.13145/bacdive132287.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Nocardioidaceae
- genus: Aeromicrobium
- species: Aeromicrobium camelliae
- full scientific name: Aeromicrobium camelliae Niu et al. 2015
@ref: 24076
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardioidaceae
genus: Aeromicrobium
species: Aeromicrobium camelliae
full scientific name: Aeromicrobium camelliae Niu et al. 2015
strain designation: YS17
type strain: yes
Culture and growth conditions
culture medium
- @ref: 24076
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 24076 | positive | growth | 28 |
| 67770 | positive | growth | 28 |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-9(H4), MK-8(H4)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 24076 | Ripened Pu'er tea | Yunnan Province | China | CHN | Asia |
| 67770 | Ripened Pu'er tea | China | CHN | Asia |
isolation source categories
- Cat1: #Engineered
- Cat2: #Food production
- Cat3: #Beverage
taxonmaps
- @ref: 69479
- File name: preview.99_21973.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_142;96_11115;97_13462;98_16575;99_21973&stattab=map
- Last taxonomy: Aeromicrobium
- 16S sequence: KJ874351
- Sequence Identity:
- Total samples: 106
- soil counts: 17
- aquatic counts: 10
- animal counts: 76
- plant counts: 3
Safety information
risk assessment
- @ref: 24076
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24076
- description: Aeromicrobium camelliae strain YS17 16S ribosomal RNA gene, partial sequence
- accession: KJ874351
- length: 1512
- database: nuccore
- NCBI tax ID: 1538144
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Aeromicrobium camelliae YS17 | 2866545001 | draft | img | 1538144 |
| 67770 | Aeromicrobium camelliae YS17T | GCA_003850045 | contig | ncbi | 1538144 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 24076 | 66 | |
| 67770 | 66 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 24076
culture collection no.: DSM 103358, CGMCC 1.12942, JCM 30592
straininfo link
- @ref: 90634
- straininfo: 406507
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 26354190 | Aeromicrobium camelliae sp. nov., isolated from Pu'er tea. | Niu L, Xiong M, Tang T, Song L, Hu X, Zhao M, Zhang K | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000583 | 2015 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tea/*microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 31124044 | Aeromicrobium endophyticum sp. nov., an endophytic actinobacterium isolated from reed (Phragmites australis). | Li FN, Liao SL, Liu SW, Jin T, Sun CH | J Microbiol | 10.1007/s12275-019-8705-7 | 2019 | Actinobacteria/classification/genetics/*isolation & purification/metabolism, Bacterial Typing Techniques, Cell Wall/chemistry/metabolism, China, DNA, Bacterial/genetics, Endophytes/classification/genetics/*isolation & purification/metabolism, Fatty Acids/chemistry/metabolism, Peptidoglycan/chemistry/metabolism, Phylogeny, Poaceae/*microbiology, RNA, Ribosomal, 16S/genetics | Metabolism |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 24076 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103358 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103358) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 90634 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406507.1 |