Strain identifier
BacDive ID: 132284
Type strain: 
Species: Marinibactrum halimedae
Strain Designation: Q-192
Strain history: <- M. Nishijima, TechnoSuruga Laboratory Co., Ltd, Nagasaki, Japan
NCBI tax ID(s): 1444977 (species)
version 8.1 (current version)
General
@ref: 24073
BacDive-ID: 132284
DSM-Number: 102970
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Marinibactrum halimedae Q-192 is a mesophilic bacterium that was isolated from macroalga Halimeda sp. sampled at the coast.
NCBI tax id
- NCBI tax id: 1444977
- Matching level: species
strain history
- @ref: 24073
- history: <- M. Nishijima, TechnoSuruga Laboratory Co., Ltd, Nagasaki, Japan
doi: 10.13145/bacdive132284.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Gammaproteobacteria, not assigned to order
- family: Gammaproteobacteria, not assigned to family
- genus: Marinibactrum
- species: Marinibactrum halimedae
- full scientific name: Marinibactrum halimedae Nishijima et al. 2015
@ref: 24073
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Gammaproteobacteria, not assigned to family
genus: Marinibactrum
species: Marinibactrum halimedae
full scientific name: Marinibactrum halimedae Nishijima et al. 2015
strain designation: Q-192
type strain: yes
Culture and growth conditions
culture medium
- @ref: 24073
- name: MARINIBACTRUM MEDIUM (DSMZ Medium 1621)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1621
- composition: Name: MARINIBACTRUM MEDIUM (DSMZ Medium 1621) Composition: Marine Broth 7.48 g/l Sea water Distilled water
culture temp
- @ref: 24073
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 24073
- sample type: macroalga Halimeda sp. sampled at the coast
- host species: Halimeda
- geographic location: Ishigaki Island, Okinawa Prefecture
- country: Japan
- origin.country: JPN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | |
| #Host | #Algae | #Green algae |
taxonmaps
- @ref: 69479
- File name: preview.99_110764.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_235;96_44298;97_56735;98_75174;99_110764&stattab=map
- Last taxonomy: Marinibactrum halimedae subclade
- 16S sequence: AB900126
- Sequence Identity:
- Total samples: 50
- soil counts: 1
- aquatic counts: 30
- animal counts: 19
Safety information
risk assessment
- @ref: 24073
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24073
- description: Marinibactrum halimedae gene for 16S ribosomal RNA, partial sequence
- accession: AB900126
- length: 1451
- database: ena
- NCBI tax ID: 1444977
Genome sequences
- @ref: 66792
- description: Marinibactrum halimedae NBRC 110095
- accession: GCA_021234875
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1444977
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | yes | 81.821 | no |
| gram-positive | no | 98.793 | no |
| anaerobic | no | 99.111 | no |
| aerobic | yes | 90.283 | no |
| halophile | yes | 76.814 | no |
| spore-forming | no | 95.197 | no |
| motile | yes | 89.859 | no |
| thermophile | no | 98.685 | yes |
| glucose-util | yes | 86.943 | no |
| glucose-ferment | no | 84.994 | no |
External links
@ref: 24073
culture collection no.: DSM 102970, NBRC 110095, NCIMB 14932
straininfo link
- @ref: 90631
- straininfo: 406768
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 28875922 | Marinibactrum halimedae gen. nov., sp. nov., a gammaproteobacterium isolated from a marine macroalga. | Nishijima M, Adachi K, Sano H, Yamasato K | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000502 | 2015 | ||
| Phylogeny | 35639595 | Sessilibacter corallicola gen. nov., sp. nov., a sessile bacterium isolated from coral Porites lutea. | Liu J, Li J, Luo J, Li Y, Yang Z, Huang C, Sun F, Wang G | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005401 | 2022 | Animals, *Anthozoa/microbiology, Bacteria/genetics, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Imidazoles, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sulfonamides, Thiophenes | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24073 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102970 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102970) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 90631 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406768.1 |