Strain identifier
BacDive ID: 132278
Type strain:
Species: Sphaerisporangium aureirubrum
Strain Designation: NEAU-GQTH1-3
Strain history: C. Liu; Northeast Agric. Univ., China; NEAU-GQTH1-3.
NCBI tax ID(s): 1544736 (species)
General
@ref: 24067
BacDive-ID: 132278
DSM-Number: 102132
keywords: 16S sequence, Bacteria, mesophilic
description: Sphaerisporangium aureirubrum NEAU-GQTH1-3 is a mesophilic bacterium that was isolated from Muddy soil from a stream.
NCBI tax id
- NCBI tax id: 1544736
- Matching level: species
strain history
@ref | history |
---|---|
24067 | <- JCM; JCM 30346 <- C. Liu; Northeast Agric. Univ., China; NEAU-GQTH1-3 |
67770 | C. Liu; Northeast Agric. Univ., China; NEAU-GQTH1-3. |
doi: 10.13145/bacdive132278.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Streptosporangiales
- family: Streptosporangiaceae
- genus: Sphaerisporangium
- species: Sphaerisporangium aureirubrum
- full scientific name: Sphaerisporangium aureirubrum Guo et al. 2015
@ref: 24067
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptosporangiaceae
genus: Sphaerisporangium
species: Sphaerisporangium aureirubrum
full scientific name: Sphaerisporangium aureirubrum Guo et al. 2015
strain designation: NEAU-GQTH1-3
type strain: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
24067 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
24067 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf |
culture temp
@ref | growth | type | temperature |
---|---|---|---|
24067 | positive | growth | 28 |
67770 | positive | growth | 28 |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-9(H4), MK-9(H6), MK-9(H2)
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
24067 | Muddy soil from a stream | Qitaihe, Heilongjiang Province | China | CHN | Asia |
67770 | Muddy soil from a stream in Qitaihe | Heilongjiang Province, northeast China | China | CHN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Mud (Sludge) |
#Environmental | #Aquatic | #River (Creek) |
#Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_31463.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_239;96_8333;97_18753;98_23379;99_31463&stattab=map
- Last taxonomy: Sphaerisporangium aureirubrum subclade
- 16S sequence: KM094177
- Sequence Identity:
- Total samples: 85
- soil counts: 62
- aquatic counts: 8
- animal counts: 2
- plant counts: 13
Safety information
risk assessment
- @ref: 24067
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24067
- description: Sphaerisporangium aureirubrum strain NEAU-GQTH1-3 16S ribosomal RNA gene, partial sequence
- accession: KM094177
- length: 1515
- database: nuccore
- NCBI tax ID: 1544736
GC content
- @ref: 24067
- GC-content: 70.4
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 24067
culture collection no.: DSM 102132, CGMCC 4.7199, JCM 30346
straininfo link
- @ref: 90625
- straininfo: 405769
literature
- topic: Phylogeny
- Pubmed-ID: 26303767
- title: Sphaerisporangium aureirubrum sp. nov., an actinomycete isolated from soil.
- authors: Guo L, Zhao J, Liu C, Bai L, Sun P, Han C, Li J, Guo X, Xiang W, Wang X
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.000554
- year: 2015
- mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
24067 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102132 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102132) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
90625 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405769.1 |