Strain identifier

BacDive ID: 132278

Type strain: Yes

Species: Sphaerisporangium aureirubrum

Strain Designation: NEAU-GQTH1-3

Strain history: C. Liu; Northeast Agric. Univ., China; NEAU-GQTH1-3.

NCBI tax ID(s): 1544736 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 24067

BacDive-ID: 132278

DSM-Number: 102132

keywords: 16S sequence, Bacteria, mesophilic

description: Sphaerisporangium aureirubrum NEAU-GQTH1-3 is a mesophilic bacterium that was isolated from Muddy soil from a stream.

NCBI tax id

  • NCBI tax id: 1544736
  • Matching level: species

strain history

@refhistory
24067<- JCM; JCM 30346 <- C. Liu; Northeast Agric. Univ., China; NEAU-GQTH1-3
67770C. Liu; Northeast Agric. Univ., China; NEAU-GQTH1-3.

doi: 10.13145/bacdive132278.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Streptosporangiaceae
  • genus: Sphaerisporangium
  • species: Sphaerisporangium aureirubrum
  • full scientific name: Sphaerisporangium aureirubrum Guo et al. 2015

@ref: 24067

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptosporangiaceae

genus: Sphaerisporangium

species: Sphaerisporangium aureirubrum

full scientific name: Sphaerisporangium aureirubrum Guo et al. 2015

strain designation: NEAU-GQTH1-3

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
24067GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
24067ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperature
24067positivegrowth28
67770positivegrowth28

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4), MK-9(H6), MK-9(H2)

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
24067Muddy soil from a streamQitaihe, Heilongjiang ProvinceChinaCHNAsia
67770Muddy soil from a stream in QitaiheHeilongjiang Province, northeast ChinaChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Mud (Sludge)
#Environmental#Aquatic#River (Creek)
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_31463.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_239;96_8333;97_18753;98_23379;99_31463&stattab=map
  • Last taxonomy: Sphaerisporangium aureirubrum subclade
  • 16S sequence: KM094177
  • Sequence Identity:
  • Total samples: 85
  • soil counts: 62
  • aquatic counts: 8
  • animal counts: 2
  • plant counts: 13

Safety information

risk assessment

  • @ref: 24067
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24067
  • description: Sphaerisporangium aureirubrum strain NEAU-GQTH1-3 16S ribosomal RNA gene, partial sequence
  • accession: KM094177
  • length: 1515
  • database: nuccore
  • NCBI tax ID: 1544736

GC content

  • @ref: 24067
  • GC-content: 70.4
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 24067

culture collection no.: DSM 102132, CGMCC 4.7199, JCM 30346

straininfo link

  • @ref: 90625
  • straininfo: 405769

literature

  • topic: Phylogeny
  • Pubmed-ID: 26303767
  • title: Sphaerisporangium aureirubrum sp. nov., an actinomycete isolated from soil.
  • authors: Guo L, Zhao J, Liu C, Bai L, Sun P, Han C, Li J, Guo X, Xiang W, Wang X
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000554
  • year: 2015
  • mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24067Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102132Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102132)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
90625Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405769.1