Strain identifier
BacDive ID: 132273
Type strain: 
Species: Micromonospora oryzae
Strain Designation: CP2R9-1
Strain history: <- NBRC; NBRC 110007 <- BCC; BCC 67266 <- C. Thawai; CP2R9-1
NCBI tax ID(s): 1530046 (species)
General
@ref: 24062
BacDive-ID: 132273
DSM-Number: 102119
keywords: 16S sequence, Bacteria, mesophilic
description: Micromonospora oryzae CP2R9-1 is a mesophilic bacterium that was isolated from Root internal tissues ,Oryza sativa.
NCBI tax id
- NCBI tax id: 1530046
- Matching level: species
strain history
- @ref: 24062
- history: <- NBRC; NBRC 110007 <- BCC; BCC 67266 <- C. Thawai; CP2R9-1
doi: 10.13145/bacdive132273.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micromonosporales
- family: Micromonosporaceae
- genus: Micromonospora
- species: Micromonospora oryzae
- full scientific name: Micromonospora oryzae Kittiwongwattana et al. 2015
@ref: 24062
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micromonosporaceae
genus: Micromonospora
species: Micromonospora oryzae
full scientific name: Micromonospora oryzae Kittiwongwattana et al. 2015
strain designation: CP2R9-1
type strain: yes
Morphology
multimedia
| @ref | multimedia content | intellectual property rights | caption |
|---|---|---|---|
| 24062 | https://www.dsmz.de/microorganisms/photos/DSM_102119-1.jpg | © Leibniz-Institut DSMZ | |
| 24062 | https://www.dsmz.de/microorganisms/photos/DSM_102119.jpg | © Leibniz-Institut DSMZ | Medium 554 28°C |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 24062 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf | |
| 24062 | N-Z-AMINE-MEDIUM (DSMZ Medium 554) | yes | https://mediadive.dsmz.de/medium/554 | Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water |
culture temp
- @ref: 24062
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 24062
- sample type: Root internal tissues ,Oryza sativa
- host species: Oryza sativa
- geographic location: Chumporn
- country: Thailand
- origin.country: THA
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Root (Rhizome) |
Safety information
risk assessment
- @ref: 24062
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24062
- description: Micromonospora oryzae gene for 16S ribosomal RNA, partial sequence
- accession: AB981052
- length: 1502
- database: ena
- NCBI tax ID: 1530046
GC content
- @ref: 24062
- GC-content: 73.8
- method: high performance liquid chromatography (HPLC)
External links
@ref: 24062
culture collection no.: DSM 102119, BCC 67266, NBRC 110007
straininfo link
- @ref: 90620
- straininfo: 400427
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year |
|---|---|---|---|---|---|---|
| Phylogeny | 26238346 | Micromonospora oryzae sp. nov., isolated from roots of upland rice. | Kittiwongwattana C, Thanaboripat D, Laosinwattana C, Koohakan P, Parinthawong N, Thawai C | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000500 | 2015 |
| Phylogeny | 34943659 | In Silico Analysis of PKS and NRPS Gene Clusters in Arisostatin- and Kosinostatin-Producers and Description of Micromonospora okii sp. nov. | Komaki H, Ichikawa N, Hosoyama A, Hamada M, Igarashi Y | Antibiotics (Basel) | 10.3390/antibiotics10121447 | 2021 |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24062 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102119 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102119) | |
| 90620 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400427.1 |