Strain identifier

BacDive ID: 132269

Type strain: Yes

Species: Catellatospora tagetis

Strain Designation: NEAU-YJC4

Strain history: C. Liu; Northeast Agric. Univ., China; NEAU-YJC4.

NCBI tax ID(s): 1490215 (species)

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General

@ref: 24058

BacDive-ID: 132269

DSM-Number: 102129

keywords: 16S sequence, Bacteria, mesophilic

description: Catellatospora tagetis NEAU-YJC4 is a mesophilic bacterium that was isolated from Root of a marigold Tagetes erecta.

NCBI tax id

  • NCBI tax id: 1490215
  • Matching level: species

strain history

@refhistory
24058<- JCM; JCM 30053 <- C. Liu; NEAU-YJC4
67770C. Liu; Northeast Agric. Univ., China; NEAU-YJC4.

doi: 10.13145/bacdive132269.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micromonosporales
  • family: Micromonosporaceae
  • genus: Catellatospora
  • species: Catellatospora tagetis
  • full scientific name: Catellatospora tagetis Zhou et al. 2015

@ref: 24058

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Catellatospora

species: Catellatospora tagetis

full scientific name: Catellatospora tagetis Zhou et al. 2015

strain designation: NEAU-YJC4

type strain: yes

Morphology

multimedia

  • @ref: 24058
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_102129.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
24058GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
24058STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf

culture temp

@refgrowthtypetemperature
24058positivegrowth28
67770positivegrowth28

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4), MK-8(H6), MK-9(H6)

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentlatitudelongitude
24058Root of a marigold Tagetes erectaTagetes erectaHeilongjiang ProvinceChinaCHNAsia45.05125.217
67770Root of a marigold (Tagetes erecta L.) in Heilongjiang ProvinceTagetes erecta L.ChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root (Rhizome)

taxonmaps

  • @ref: 69479
  • File name: preview.99_128570.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_3745;97_11741;98_14429;99_128570&stattab=map
  • Last taxonomy: Catellatospora tagetis
  • 16S sequence: KJ522750
  • Sequence Identity:
  • Total samples: 545
  • soil counts: 369
  • aquatic counts: 73
  • animal counts: 17
  • plant counts: 86

Safety information

risk assessment

  • @ref: 24058
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24058
  • description: Catellatospora tagetis strain NEAU-YJC4 16S ribosomal RNA gene, partial sequence
  • accession: KJ522750
  • length: 1516
  • database: nuccore
  • NCBI tax ID: 1490215

GC content

@refGC-contentmethod
2405871.1thermal denaturation, midpoint method (Tm)
6777070.8-71.4thermal denaturation, midpoint method (Tm)

External links

@ref: 24058

culture collection no.: DSM 102129, CGMCC 4.7176, JCM 30053

straininfo link

  • @ref: 90616
  • straininfo: 401791

literature

  • topic: Phylogeny
  • Pubmed-ID: 26111852
  • title: Catellatospora tagetis sp. nov., isolated from the root of a marigold (Tagetes erecta L.).
  • authors: Zhou Y, Liu C, Zhang Y, Zhao J, Li C, He H, Li J, Wang X, Xiang W
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-015-0511-6
  • year: 2015
  • mesh: Bacterial Typing Techniques, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Micromonosporaceae/*classification/genetics/*isolation & purification/physiology, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tagetes/*microbiology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24058Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102129Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102129)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
90616Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401791.1