Strain identifier
BacDive ID: 132265
Type strain: 
Species: Salininema proteolyticum
Strain history: <- CCTCC; CCTCC AA2013002
NCBI tax ID(s): 1607685 (species)
version 8.1 (current version)
General
@ref: 24054
BacDive-ID: 132265
DSM-Number: 103380
keywords: 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive
description: Salininema proteolyticum DSM 103380 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from hypersaline soil.
NCBI tax id
- NCBI tax id: 1607685
- Matching level: species
strain history
- @ref: 24054
- history: <- CCTCC; CCTCC AA2013002
doi: 10.13145/bacdive132265.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Glycomycetales
- family: Glycomycetaceae
- genus: Salininema
- species: Salininema proteolyticum
- full scientific name: Salininema proteolyticum Nikou et al. 2015
synonyms
- @ref: 20215
- synonym: Paraglycomyces xinjiangensis
@ref: 24054
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Glycomycetaceae
genus: Salininema
species: Salininema proteolyticum
full scientific name: Salininema proteolyticum Nikou et al. 2015 emend. Li et al. 2016
type strain: no
Morphology
cell morphology
- @ref: 43623
- gram stain: positive
colony morphology
- @ref: 43623
- colony color: White
- medium used: ISP3, ISP7
pigmentation
- @ref: 43623
- production: no
multimedia
- @ref: 24054
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_103380.jpg
- caption: Medium 1159 37°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 43623 | ISP3, ISP7 | yes | ||
| 24054 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 43623 | positive | growth | 20-40 | |
| 43623 | positive | optimum | 37 | mesophilic |
| 24054 | positive | growth | 37 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 43623 | positive | growth | 7-9 | alkaliphile |
| 43623 | positive | optimum | 8 |
Physiology and metabolism
oxygen tolerance
- @ref: 43623
- oxygen tolerance: aerobe
spore formation
- @ref: 43623
- spore description: spherical sporangia containing several spherical spores develop at mycelial aggregations
- type of spore: spore
- spore formation: yes
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 43623 | NaCl | positive | growth | 3-15 % |
| 43623 | NaCl | positive | optimum | 8-13 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 43623 | 62345 | L-rhamnose | - | carbon source |
| 43623 | 18222 | xylose | - | carbon source |
| 43623 | 62968 | cellulose | - | hydrolysis |
| 43623 | 22599 | arabinose | + | carbon source |
| 43623 | 15824 | D-fructose | + | carbon source |
| 43623 | 28260 | galactose | + | carbon source |
| 43623 | 17234 | glucose | + | carbon source |
| 43623 | 17268 | myo-inositol | + | carbon source |
| 43623 | 17716 | lactose | + | carbon source |
| 43623 | 17306 | maltose | + | carbon source |
| 43623 | 29864 | mannitol | + | carbon source |
| 43623 | 16634 | raffinose | + | carbon source |
| 43623 | 33942 | ribose | + | carbon source |
| 43623 | 30911 | sorbitol | + | carbon source |
| 43623 | 5291 | gelatin | + | hydrolysis |
| 43623 | 28017 | starch | + | hydrolysis |
| 43623 | 17632 | nitrate | + | reduction |
metabolite production
| @ref | Chebi-ID | metabolite | production |
|---|---|---|---|
| 43623 | 16136 | hydrogen sulfide | no |
| 43623 | 89634 | melanin | no |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 43623 | catalase | + | 1.11.1.6 |
| 43623 | cytochrome oxidase | + | 1.9.3.1 |
| 43623 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 24054 | hypersaline soil | Lop Nur salt lake, Xinjiang Province | China | CHN | Asia | 39.5833 | 89.7667 |
| 43623 | a hypersaline soil sample collected from the Lop Nur salt lake | Xinjiang Province | China | CHN | Asia | 39.583 | 89.766 |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Condition | #Saline | |
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_68774.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_344;96_29597;97_37346;98_48391;99_68774&stattab=map
- Last taxonomy: Salininema proteolyticum subclade
- 16S sequence: AB857719
- Sequence Identity:
- Total samples: 357
- soil counts: 52
- aquatic counts: 25
- animal counts: 278
- plant counts: 2
Safety information
risk assessment
- @ref: 24054
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24054
- description: Salininema proteolyticum gene for 16S ribosomal RNA, partial sequence
- accession: AB857719
- length: 1482
- database: ena
- NCBI tax ID: 1607685
GC content
- @ref: 24054
- GC-content: 70
- method: high performance liquid chromatography (HPLC)
External links
@ref: 24054
culture collection no.: DSM 103380, CCTCC AA 2013002, KACC 17683, NRRL B-24926, TRM 49201
straininfo link
- @ref: 90613
- straininfo: 407779
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 26337957 | Paraglycomyces xinjiangensis gen. nov., sp. nov., a halophilic actinomycete. | Luo XX, Han XX, Zhang F, Wan CX, Zhang LL | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000571 | 2015 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Salinity, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 27088835 | Description of Salilacibacter albus gen. nov., sp. nov., isolated from a dried salt lake, and reclassification of Paraglycomyces xinjiangensis Luo et al. 2015 as a later heterotypic synonym of Salininema proteolyticum Nikou et al. 2015 with emended descriptions of the genus Salininema and Salininema proteolyticum. | Li XJ, Liu JM, Wu Y, Zhang WM, Li J, Liu SW, Wu G, Hu L, Chen L, Huang DL, Li RF, Sun CH | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001093 | 2016 | Actinobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Lakes/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Salinity, Sequence Analysis, DNA, Sodium Chloride | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 24054 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103380 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103380) | |||
| 43623 | Xiao-Jun Li, Jia-Meng Liu, Yue Wu, Wei-Ming Zhang, Jing Li, Shao-Wei Liu, Gang Wu, Lin Hu, Li Chen, Da-Lin Huang, Rong-Feng Li, Cheng-Hang Sun | Description of Salilacibacter albus gen. nov., sp. nov., isolated from a dried salt lake, and reclassification of Paraglycomyces xinjiangensis Luo et al. 2015 as a later heterotypic synonym of Salininema proteolyticum Nikou et al. 2015 with emended descriptions of the genus Salininema and Salininema proteolyticum | 10.1099/ijsem.0.001093 | IJSEM 66: 2558-2565 2016 | 27088835 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 90613 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407779.1 |