Strain identifier

BacDive ID: 132262

Type strain: Yes

Species: Rheinheimera mesophila

Strain Designation: IITR-13

Strain history: <- M. Shanmugam, MTCC; IITR-13 <- A. Kumar

NCBI tax ID(s): 1547515 (species)

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General

@ref: 24051

BacDive-ID: 132262

DSM-Number: 29723

keywords: 16S sequence, Bacteria

description: Rheinheimera mesophila IITR-13 is a bacterium that was isolated from pesticide-contaminated sandy soil from an industrial waste site.

NCBI tax id

  • NCBI tax id: 1547515
  • Matching level: species

strain history

  • @ref: 24051
  • history: <- M. Shanmugam, MTCC; IITR-13 <- A. Kumar

doi: 10.13145/bacdive132262.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Chromatiales
  • family: Chromatiaceae
  • genus: Rheinheimera
  • species: Rheinheimera mesophila
  • full scientific name: Rheinheimera mesophila Kumar et al. 2015

  • synonyms

    • @ref: 20215
    • synonym: Pararheinheimera mesophila

@ref: 24051

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Chromatiales

family: Chromatiaceae

genus: Rheinheimera

species: Rheinheimera mesophila

full scientific name: Rheinheimera mesophila Kumar et al. 2015

strain designation: IITR-13

type strain: yes

Isolation, sampling and environmental information

isolation

  • @ref: 24051
  • sample type: pesticide-contaminated sandy soil from an industrial waste site
  • geographic location: Kerala, Cochin region, Eloor (10° 04' 41'' N 76° 17' 42'' E)
  • country: India
  • origin.country: IND
  • continent: Asia
  • latitude: 10.0781
  • longitude: 76.295

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination
#Engineered#Waste#Industrial waste
#Environmental#Terrestrial#Sandy
#Environmental#Terrestrial#Soil

Sequence information

16S sequences

  • @ref: 24051
  • description: Rheinheimera mesophila strain IITR-13 16S ribosomal RNA gene, partial sequence
  • accession: KM025195
  • length: 1488
  • database: ena
  • NCBI tax ID: 1547515

GC content

  • @ref: 24051
  • GC-content: 47.8
  • method: sequence analysis

External links

@ref: 24051

culture collection no.: DSM 29723, MTCC 12064

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny26220076Taxonomic description and genome sequence of Rheinheimera mesophila sp. nov., isolated from an industrial waste site.Kumar A, Bajaj A, Mathan Kumar R, Kaur G, Kaur N, Kumar Singh N, Manickam N, Mayilraj SInt J Syst Evol Microbiol10.1099/ijsem.0.0004712015Bacterial Typing Techniques, Base Sequence, Chromatiaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, India, *Industrial Waste, Molecular Sequence Data, Nucleic Acid Hybridization, Pesticides, Phospholipids/chemistry, *Phylogeny, Quinones/chemistry, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Soil PollutantsGenetics
Phylogeny31800389Rheinheimera sediminis sp. nov., a marine bacterium isolated from coastal sediment.Yu Q, Qi Y, Zhang H, Pu JInt J Syst Evol Microbiol10.1099/ijsem.0.0039172020Bacterial Typing Techniques, Base Composition, China, Chromatiaceae/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome
Phylogeny33052808Rheinheimera mangrovi sp. nov., a bacterium isolated from mangrove sediment.Zhang W, Zhu S, Cheng Y, Ding L, Li S, Peng N, He SInt J Syst Evol Microbiol10.1099/ijsem.0.0045132020Bacterial Typing Techniques, Base Composition, China, Chromatiaceae/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry, *WetlandsTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24051Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29723Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29723)