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Strain identifier

BacDive ID: 132257

Type strain: Yes

Species: Ursidibacter maritimus

Strain Designation: PB43106

Strain history: <- M.J. Hansen, Fac. of Health and Med. Scs., Univ. Copenhagen, Frederiksberg, Denmark; PB43106

NCBI tax ID(s): 1331689 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 24046

BacDive-ID: 132257

DSM-Number: 28137

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic

description: Ursidibacter maritimus PB43106 is a microaerophile, mesophilic bacterium that was isolated from oral cavity of a healthy wild polar bear.

NCBI tax id

  • NCBI tax id: 1331689
  • Matching level: species

strain history: <- M.J. Hansen, Fac. of Health and Med. Scs., Univ. Copenhagen, Frederiksberg, Denmark; PB43106

doi: 10.13145/bacdive132257.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Ursidibacter
  • species: Ursidibacter maritimus
  • full scientific name: Ursidibacter maritimus Hansen et al. 2015

@ref: 24046

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Ursidibacter

species: Ursidibacter maritimus

full scientific name: Ursidibacter maritimus Hansen et al. 2015

strain designation: PB43106

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 98.794

colony morphology

  • @ref: 63202
  • incubation period: 1 day

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
24046COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
24046BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
63202positivegrowth37mesophilic
24046positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 63202
  • oxygen tolerance: microaerophile

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 98.445

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 96.207

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838116199urea-hydrolysis
6838116443D-tagatose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
683816731melezitose-builds acid from
6838128053melibiose-builds acid from
6838117306maltose+builds acid from
6838127941pullulan-builds acid from
6838128087glycogen-builds acid from
68381606565hippurate-hydrolysis
6838140585alpha-cyclodextrin-builds acid from
6838118333D-arabitol-builds acid from
6838130849L-arabinose-builds acid from
6838117992sucrose-builds acid from
6838116634raffinose-builds acid from
6838127082trehalose+builds acid from
6838117716lactose-builds acid from
6838130911sorbitol-builds acid from
6838116899D-mannitol-builds acid from
6838129016arginine-hydrolysis
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan+energy source
6836917632nitrate-reduction

metabolite production

@refChebi-IDmetaboliteproduction
6838115688acetoinno
6836935581indoleyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6838115688acetoin-
6836935581indole+

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase-
68381alkaline phosphatase+3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase-3.5.3.6
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
24046-+-----+------------

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
24046--+--++/----+--------------+------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
24046oral cavity of a healthy wild polar bearCentral East Greenland, Scoresbysound, Kap TobinGreenlandGRLNorth America
63202Oral cavity of a wild polar bear69°00'N and 74°00'NGreenlandGRLNorth America2011-02-01

isolation source categories

Cat1Cat2
#Host#Mammals
#Host Body-Site#Oral cavity and airways

taxonmaps

  • @ref: 69479
  • File name: preview.99_173945.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_18;96_64752;97_84002;98_113892;99_173945&stattab=map
  • Last taxonomy: Ursidibacter maritimus subclade
  • 16S sequence: KJ632968
  • Sequence Identity:
  • Total samples: 260
  • soil counts: 4
  • aquatic counts: 18
  • animal counts: 237
  • plant counts: 1

Sequence information

16S sequences

  • @ref: 24046
  • description: Ursidibacter maritimus strain Pb43106 16S ribosomal RNA gene, partial sequence
  • accession: KJ632968
  • length: 1358
  • database: ena
  • NCBI tax ID: 1331689

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Ursidibacter maritimus Pb43106GCA_009761395contigncbi1331689
66792Ursidibacter maritimus Pb43106GCA_019188485scaffoldncbi1331689
66792Ursidibacter maritimus Pb431062887071027draftimg1331689

GC content

  • @ref: 24046
  • GC-content: 39.3
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 24046

culture collection no.: DSM 28137, CCUG 65144

literature

  • topic: Phylogeny
  • Pubmed-ID: 26220443
  • title: Ursidibacter maritimus gen. nov., sp. nov. and Ursidibacter arcticus sp. nov., two new members of the family Pasteurellaceae isolated from the oral cavity of bears.
  • authors: Johanne Hansen M, Strom Braaten M, Miki Bojesen A, Christensen H, Sonne C, Dietz R, Frost Bertelsen M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000476
  • year: 2015
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Molecular Sequence Data, Mouth/*microbiology, Pasteurellaceae/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry, Ursidae/*microbiology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24046Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28137Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28137)
63202Curators of the CCUGhttps://www.ccug.se/strain?id=65144Culture Collection University of Gothenburg (CCUG) (CCUG 65144)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
68381Automatically annotated from API rID32STR
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes