Archive BacDiveID:10.13145/bacdive132253.20230509.8.1

Strain identifier

BacDive ID: 132253

Type strain:

Species: Micromonospora harpali

Strain Designation: NEAU-JC6

Strain history: C. Liu; Northeast Agric. Univ., China; NEAU-JC6.

NCBI tax ID(s): 1490225 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 24042

BacDive-ID: 132253

DSM-Number: 102130

keywords: 16S sequence, Bacteria, mesophilic

description: Micromonospora harpali NEAU-JC6 is a mesophilic bacterium that was isolated from Beetle .

NCBI tax id

NCBI tax id: 1490225
Matching level: species

strain history

@ref	history
24042	<- JCM; JCM 30055 <- C. Liu; NEAU-JC6
67770	C. Liu; Northeast Agric. Univ., China; NEAU-JC6.

doi: 10.13145/bacdive132253.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Micromonosporales
family: Micromonosporaceae
genus: Micromonospora
species: Micromonospora harpali
full scientific name: Micromonospora harpali Fang et al. 2015

@ref: 24042

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Micromonospora

species: Micromonospora harpali

full scientific name: Micromonospora harpali Fang et al. 2015

strain designation: NEAU-JC6

type strain: yes

Morphology

multimedia

@ref: 24042
multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_102130.jpg
caption: Medium 83 28°C
intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@ref: 24042
name: CZAPEK PEPTONE AGAR (DSMZ Medium 83)
growth: yes
link: https://mediadive.dsmz.de/medium/83
composition: Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water

culture temp

@ref	growth	type	temperature	range
24042	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

observation

@ref: 67770
observation: quinones: MK-9(H₆), MK-9(H₄)

Isolation, sampling and environmental information

isolation

@ref	sample type	host species	geographic location	country	origin.country	continent
24042	Beetle (Harpalus sinicus Hope)	Harpalus sinicus	Harbin, Heilonjiang	China	CHN	Asia
67770	Beetle (Harpalus sinicus Hope) in Northeast Agric. Univ.	Harpalus sinicus	Harbin	China	CHN	Asia

isolation source categories

Cat1: #Host
Cat2: #Arthropoda
Cat3: #Insecta

taxonmaps

@ref: 69479
File name: preview.99_4459.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_404;97_1111;98_1509;99_4459&stattab=map
Last taxonomy: Micromonospora
16S sequence: KJ609003
Sequence Identity:
Total samples: 406
soil counts: 301
aquatic counts: 39
animal counts: 41
plant counts: 25

Safety information

risk assessment

@ref: 24042
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 24042
description: Micromonospora harpali strain NEAU-JC6 16S ribosomal RNA gene, partial sequence
accession: KJ609003
length: 1508
database: ena
NCBI tax ID: 1490225

GC content

@ref	GC-content	method
24042	70.2	thermal denaturation, midpoint method (Tm)
67770	70-70.4	thermal denaturation, midpoint method (Tm)

External links

@ref: 24042

culture collection no.: DSM 102130, CGMCC 4.7173, JCM 30055

straininfo link

@ref: 90602
straininfo: 398985

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	25957972	Two new species of the genus Micromonospora: Micromonospora palomenae sp. nov. and Micromonospora harpali sp. nov. isolated from the insects.	Fang B, Liu C, Guan X, Song J, Zhao J, Liu H, Li C, Ning W, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-015-0472-9	2015	Animals, Bacterial Typing Techniques, China, Cluster Analysis, DNA Gyrase/genetics, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Insecta/microbiology, Micromonospora/classification/genetics/*isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA	Genetics
Phylogeny	26942919	Micromonospora mangrovi sp. nov., isolated from mangrove soil.	Xie QY, Ren J, Li L, Li Y, Deng ZX, Hong K	Antonie Van Leeuwenhoek	10.1007/s10482-015-0641-x	2016	Base Composition, Base Sequence, China, DNA, Bacterial/genetics, Micromonospora/classification/genetics/isolation & purification, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil, Soil Microbiology, *Wetlands	Transcriptome

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
24042	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-102130	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102130)
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/
90602	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID398985.1