Strain identifier
BacDive ID: 132250
Type strain: 
Species: Wenzhouxiangella marina
Strain history: <- KCTC <- G. Wang, Key Laboratory of Tropical Marine Bio-resouces and Ecology, Guangzhou, China
NCBI tax ID(s): 1579979 (species)
version 8.1 (current version)
General
@ref: 24039
BacDive-ID: 132250
DSM-Number: 103414
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Wenzhouxiangella marina DSM 103414 is a mesophilic, Gram-negative bacterium that was isolated from culture broth of marine microalga Picochloruma sp. 122.
NCBI tax id
- NCBI tax id: 1579979
- Matching level: species
strain history
- @ref: 24039
- history: <- KCTC <- G. Wang, Key Laboratory of Tropical Marine Bio-resouces and Ecology, Guangzhou, China
doi: 10.13145/bacdive132250.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Chromatiales
- family: Wenzhouxiangellaceae
- genus: Wenzhouxiangella
- species: Wenzhouxiangella marina
- full scientific name: Wenzhouxiangella marina Wang et al. 2015
@ref: 24039
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Chromatiales
family: Wenzhouxiangellaceae
genus: Wenzhouxiangella
species: Wenzhouxiangella marina
full scientific name: Wenzhouxiangella marina Wang et al. 2015
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.913
Culture and growth conditions
culture medium
- @ref: 24039
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 24039
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.988 |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | - | assimilation |
| 68369 | 17128 | adipate | - | assimilation |
| 68369 | 27689 | decanoate | - | assimilation |
| 68369 | 24265 | gluconate | - | assimilation |
| 68369 | 17306 | maltose | - | assimilation |
| 68369 | 59640 | N-acetylglucosamine | - | assimilation |
| 68369 | 16899 | D-mannitol | - | assimilation |
| 68369 | 16024 | D-mannose | - | assimilation |
| 68369 | 30849 | L-arabinose | - | assimilation |
| 68369 | 17634 | D-glucose | - | assimilation |
| 68369 | 5291 | gelatin | + | hydrolysis |
| 68369 | 4853 | esculin | - | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | - | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | cytochrome oxidase | + | 1.9.3.1 |
| 68369 | gelatinase | + | |
| 68369 | beta-glucosidase | - | 3.2.1.21 |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24039 | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 24039
- sample type: culture broth of marine microalga Picochloruma sp. 122
- host species: Picochloruma
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Laboratory | #Lab enrichment |
| #Environmental | #Aquatic | #Marine |
| #Host | #Algae |
taxonmaps
- @ref: 69479
- File name: preview.99_6297.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_563;96_2997;97_3684;98_4665;99_6297&stattab=map
- Last taxonomy: Wenzhouxiangella marina subclade
- 16S sequence: KM504518
- Sequence Identity:
- Total samples: 663
- soil counts: 63
- aquatic counts: 559
- animal counts: 38
- plant counts: 3
Safety information
risk assessment
- @ref: 24039
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24039
- description: Wenzhouxiangella marina strain Ma-11 16S ribosomal RNA gene, partial sequence
- accession: KM504518
- length: 1398
- database: ena
- NCBI tax ID: 1579979
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Wenzhouxiangella marina KCTC 42284 | GCA_001187785 | complete | ncbi | 1579979 |
| 66792 | Wenzhouxiangella marina DSM 103414 | GCA_014203035 | scaffold | ncbi | 1579979 |
| 66792 | Wenzhouxiangella marina strain DSM 103414 | 1579979.9 | wgs | patric | 1579979 |
| 66792 | Wenzhouxiangella marina strain KCTC 42284 | 1579979.7 | complete | patric | 1579979 |
| 66792 | Wenzhouxiangella marina KCTC 42284 | 2654587665 | complete | img | 1579979 |
| 66792 | Wenzhouxiangella marina DSM 103414 | 2861680764 | draft | img | 1579979 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 81.59 | no |
| flagellated | no | 93.936 | no |
| gram-positive | no | 98.893 | no |
| anaerobic | no | 98.28 | no |
| aerobic | yes | 78.08 | no |
| halophile | no | 63.788 | no |
| spore-forming | no | 97.566 | no |
| glucose-util | yes | 52.718 | yes |
| thermophile | no | 98.583 | no |
| glucose-ferment | no | 90.268 | yes |
External links
@ref: 24039
culture collection no.: DSM 103414, CGMCC 1.14936, KCTC 42284, MCCC 1K00261
straininfo link
- @ref: 90600
- straininfo: 397392
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25903846 | Wenzhouxiangella marina gen. nov, sp. nov, a marine bacterium from the culture broth of Picochlorum sp. 122, and proposal of Wenzhouxiangellaceae fam. nov. in the order Chromatiales. | Wang G, Tang M, Li T, Dai S, Wu H, Chen C, He H, Fan J, Xiang W, Li X | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0458-7 | 2015 | Aerobiosis, Aquatic Organisms/*classification/growth & development/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Chlorophyta/growth & development, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Gammaproteobacteria/*classification/*isolation & purification/physiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Enzymology |
| 26411640 | Complete genome of the marine bacterium Wenzhouxiangella marina KCTC 42284(T). | Lee SH, Choe H, Kim BK, Nasir A, Kim KM | Mar Genomics | 10.1016/j.margen.2015.09.006 | 2015 | Chromosome Mapping, Chromosomes, Bacterial, Gene Expression Regulation, Bacterial, Gram-Negative Aerobic Bacteria/*genetics, Microalgae/microbiology, RNA, Bacterial/genetics | ||
| Phylogeny | 27498848 | Wenzhouxiangella sediminis sp. nov., isolated from coastal sediment. | Guo LY, Dunlap CA, Rooney AP, Chen GJ, Du ZJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001393 | 2016 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, Islands, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*chemistry, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 30569387 | Description of Wenzhouxiangella salilacus sp. nov., a moderate halophilic bacterium isolated from a salt lake in Xinjiang Province, China. | Han SB, Hou XJ, Yu YH, Ju Z, Zhang R, Wang RJ, Ye YH, Ren YH, Zhang WY, Wu M | Antonie Van Leeuwenhoek | 10.1007/s10482-018-01216-w | 2018 | Bacterial Typing Techniques, China, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Gammaproteobacteria/classification/genetics/*isolation & purification/metabolism, Lakes/analysis/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Sodium Chloride/analysis/metabolism | Metabolism |
| Phylogeny | 32658636 | Wenzhouxiangella limi sp. nov., isolated from a salt lake. | Zhang XY, Zhang R, Wang JC, Zhang T, Du ZJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004320 | 2020 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/isolation & purification, Lakes/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Saline Waters, Sequence Analysis, DNA, Ubiquinone/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 24039 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103414 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103414) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 68369 | Automatically annotated from API 20NE | |||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
| 90600 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397392.1 |