Strain identifier

BacDive ID: 132229

Type strain: Yes

Species: Staphylococcus argensis

Strain Designation: M4S-6

Strain history: CIP <- 2015, S. Hess, Karlsruhe Inst. Technol., Karlsruhe, Germany: strain M4S-6

NCBI tax ID(s): 1607738 (species)

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General

@ref: 24018

BacDive-ID: 132229

DSM-Number: 29875

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, coccus-shaped

description: Staphylococcus argensis M4S-6 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from river sediment.

NCBI tax id

  • NCBI tax id: 1607738
  • Matching level: species

strain history

@refhistory
24018<- S. Heß, KIT; M4S-6
116489CIP <- 2015, S. Hess, Karlsruhe Inst. Technol., Karlsruhe, Germany: strain M4S-6

doi: 10.13145/bacdive132229.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Staphylococcus
  • species: Staphylococcus argensis
  • full scientific name: Staphylococcus argensis Heß and Gallert 2015

@ref: 24018

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Staphylococcus

species: Staphylococcus argensis

full scientific name: Staphylococcus argensis Heß and Gallert 2015

strain designation: M4S-6

type strain: yes

Morphology

cell morphology

  • @ref: 116489
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: no

colony morphology

  • @ref: 63766
  • incubation period: 1 day

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
24018TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
116489CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
63766positivegrowth37
24018positivegrowth37

Physiology and metabolism

oxygen tolerance

  • @ref: 63766
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837517992sucrose+fermentation
6837517632nitrate-reduction
6837516988D-ribose-fermentation
6837517057cellobiose-fermentation
6837516634raffinose-fermentation
6837516899D-mannitol-fermentation
6837527082trehalose-fermentation
683754853esculin-hydrolysis
6837518257ornithine+degradation
6837516199urea-hydrolysis
6837529016arginine-hydrolysis
6837522599arabinose-fermentation
6837532528turanose-fermentation
6837559640N-acetylglucosamine-fermentation
6837517716lactose-fermentation
6837517306maltose-fermentation
6837515824D-fructose+fermentation
6837517634D-glucose+fermentation

metabolite production

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68375beta-glucuronidase-3.2.1.31
68375alkaline phosphatase-3.1.3.1
68375L-arginine arylamidase-
68375ornithine decarboxylase+4.1.1.17
68375pyrrolidonyl arylamidase-3.4.19.3
68375beta-galactosidase-3.2.1.23
68375beta-glucosidase-3.2.1.21
68375arginine dihydrolase-3.5.3.6
68375urease-3.5.1.5

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
24018--+-+++/--------------++----
24018--+-++---------------+----

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling dateisolation date
24018river sedimentriver ArgenGermanyDEUEurope
63766Fresh water,environmental sedimentsRiver ArgenGermanyDEUEurope2012-10-01
116489Environment, Water, riverRiver Argen, South GermanyGermanyDEUEurope2012-10-26

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#River (Creek)
#Environmental#Aquatic#Sediment

Safety information

risk assessment

  • @ref: 116489
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 24018
  • description: Staphylococcus argensis strain M4S-6 16S ribosomal RNA gene, partial sequence
  • accession: KP716705
  • length: 1080
  • database: nuccore
  • NCBI tax ID: 1607738

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Staphylococcus argensis DSM 29875GCA_002902305scaffoldncbi1607738
66792Staphylococcus argensis strain DSM 298751607738.3wgspatric1607738
66792Staphylococcus argensis DSM 298752917419282draftimg1607738

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingyes87.913no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no98.645yes
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes65.652yes
69480spore-formingspore-formingAbility to form endo- or exosporesno74.663no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno94.574yes
69480flagellatedmotile2+Ability to perform flagellated movementno84.888no

External links

@ref: 24018

culture collection no.: DSM 29875, CIP 110904, CCUG 70920

straininfo link

  • @ref: 90579
  • straininfo: 400909

literature

  • topic: Phylogeny
  • Pubmed-ID: 25964519
  • title: Staphylococcus argensis sp. nov., a novel staphylococcal species isolated from an aquatic environment.
  • authors: Hess S, Gallert C
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.000319
  • year: 2015
  • mesh: Bacterial Typing Techniques, Coagulase, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Germany, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, Sequence Analysis, DNA, Staphylococcus/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24018Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29875Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29875)
63766Curators of the CCUGhttps://www.ccug.se/strain?id=70920Culture Collection University of Gothenburg (CCUG) (CCUG 70920)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68375Automatically annotated from API ID32STA
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
90579Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400909.1
116489Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110904Collection of Institut Pasteur (CIP 110904)