Archive BacDiveID:10.13145/bacdive132228.20230509.8.1

Strain identifier

BacDive ID: 132228

Type strain:

Species: Nocardioides antarcticus

Strain Designation: M-SA3-94

Strain history: LMG 28254 <-- S. Deng; CCTCC, Wuhan Univ., China; M-SA3-94.

NCBI tax ID(s): 1535312 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 24017

BacDive-ID: 132228

DSM-Number: 102912

keywords: 16S sequence, Bacteria, psychrophilic

description: Nocardioides antarcticus M-SA3-94 is a psychrophilic bacterium that was isolated from sediment, Ardley cove.

NCBI tax id

NCBI tax id: 1535312
Matching level: species

strain history

@ref	history
24017	<- BCCM/LMG, University of Gent, Belgium; LMG 28254 <- S. Deng, CTCC, Wuhan University, PR China; M-SA3-94
67770	LMG 28254 <-- S. Deng; CCTCC, Wuhan Univ., China; M-SA3-94.

doi: 10.13145/bacdive132228.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Propionibacteriales
family: Nocardioidaceae
genus: Nocardioides
species: Nocardioides antarcticus
full scientific name: Nocardioides antarcticus Deng et al. 2015

@ref: 24017

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardioidaceae

genus: Nocardioides

species: Nocardioides antarcticus

full scientific name: Nocardioides antarcticus Deng et al. 2015

strain designation: M-SA3-94

type strain: yes

Culture and growth conditions

culture medium

@ref: 24017
name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
growth: yes
link: https://mediadive.dsmz.de/medium/514
composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@ref	growth	type	temperature	range
24017	positive	growth	20	psychrophilic
67770	positive	growth	20	psychrophilic

Physiology and metabolism

observation

@ref: 67770
observation: quinones: MK-8(H₄)

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	origin.country	continent	latitude	longitude
24017	sediment, Ardley cove	King George Island	Antarctica	ATA	Australia and Oceania	-62.2	-58.9167
67770	Marine sediment of Ardley cove	King George Island	Antarctica	ATA	Antarctica

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

taxonmaps

@ref: 69479
File name: preview.99_88659.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_142;96_26402;97_46714;98_61218;99_88659&stattab=map
Last taxonomy: Nocardioides antarcticus subclade
16S sequence: KM347967
Sequence Identity:
Total samples: 1629
soil counts: 690
aquatic counts: 401
animal counts: 391
plant counts: 147

Safety information

risk assessment

@ref: 24017
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 24017
description: Nocardioides antarcticus strain M-SA3-94 16S ribosomal RNA gene, partial sequence
accession: KM347967
length: 1500
database: ena
NCBI tax ID: 1535312

GC content

@ref: 67770
GC-content: 66.7
method: high performance liquid chromatography (HPLC)

External links

@ref: 24017

culture collection no.: DSM 102912, CCTCC AB 2014053, LMG 28254, JCM 32437

straininfo link

@ref: 90578
straininfo: 393877

literature

topic: Phylogeny
Pubmed-ID: 25951861
title: Nocardioides antarcticus sp. nov., isolated from marine sediment.
authors: Deng S, Chang X, Zhang Y, Ren L, Jiang F, Qu Z, Peng F
journal: Int J Syst Evol Microbiol
DOI: 10.1099/ijs.0.000309
year: 2015
mesh: Actinomycetales/*classification/genetics/isolation & purification, Antarctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
topic2: Genetics

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
24017	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-102912	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102912)
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/
90578	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID393877.1