Strain identifier

BacDive ID: 132228

Type strain: Yes

Species: Nocardioides antarcticus

Strain Designation: M-SA3-94

Strain history: LMG 28254 <-- S. Deng; CCTCC, Wuhan Univ., China; M-SA3-94.

NCBI tax ID(s): 1535312 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 24017

BacDive-ID: 132228

DSM-Number: 102912

keywords: psychrophilic, Bacteria, 16S sequence

description: Nocardioides antarcticus M-SA3-94 is a psychrophilic bacterium that was isolated from sediment, Ardley cove.

NCBI tax id

  • NCBI tax id: 1535312
  • Matching level: species

strain history

doi: 10.13145/bacdive132228.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Nocardioidaceae
  • genus: Nocardioides
  • species: Nocardioides antarcticus
  • full scientific name: Nocardioides antarcticus Deng et al. 2015

@ref: 24017

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardioidaceae

genus: Nocardioides

species: Nocardioides antarcticus

full scientific name: Nocardioides antarcticus Deng et al. 2015

strain designation: M-SA3-94

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 24017
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
24017positivegrowth20psychrophilic
67770positivegrowth20psychrophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-8(H4)

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
24017sediment, Ardley coveKing George IslandAntarcticaATAAustralia and Oceania-62.2-58.9167
67770Marine sediment of Ardley coveKing George IslandAntarcticaATAAntarctica

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

Safety information

risk assessment

  • @ref: 24017
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24017
  • description: Nocardioides antarcticus strain M-SA3-94 16S ribosomal RNA gene, partial sequence
  • accession: KM347967
  • length: 1500
  • database: ena
  • NCBI tax ID: 1535312

GC content

  • @ref: 67770
  • GC-content: 66.7
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 24017

culture collection no.: DSM 102912, CCTCC AB 2014053, LMG 28254, JCM 32437

straininfo link

@refpassport
20218http://www.straininfo.net/strains/902458
20218http://www.straininfo.net/strains/896093

literature

  • topic: Phylogeny
  • Pubmed-ID: 25951861
  • title: Nocardioides antarcticus sp. nov., isolated from marine sediment.
  • authors: Deng S, Chang X, Zhang Y, Ren L, Jiang F, Qu Z, Peng F
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.000309
  • year: 2015
  • mesh: Actinomycetales/*classification/genetics/isolation & purification, Antarctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
24017Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102912Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102912)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/