Strain identifier

BacDive ID: 132218

Type strain: Yes

Species: Flaviaestuariibacter amylovorans

Strain Designation: GCR0105

Strain history: K. Y. Jahng GCR0105.

NCBI tax ID(s): 1084520 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 24007

BacDive-ID: 132218

DSM-Number: 103129

keywords: 16S sequence, Bacteria, mesophilic

description: Flaviaestuariibacter amylovorans GCR0105 is a mesophilic bacterium that was isolated from Water of the Mangyung estuary enclosed by the Saemangeum Embankment.

NCBI tax id

  • NCBI tax id: 1084520
  • Matching level: species

strain history

@refhistory
24007<- JCM; JCM 17919 <- K.Y. Jahng, Chonbuk National Univ., Dept. of Life Scs., Jeonju-si, Korea; GCR0105
67770K. Y. Jahng GCR0105.

doi: 10.13145/bacdive132218.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Chitinophagia
  • order: Chitinophagales
  • family: Chitinophagaceae
  • genus: Flaviaestuariibacter
  • species: Flaviaestuariibacter amylovorans
  • full scientific name: Flaviaestuariibacter amylovorans corrig. Kang et al. 2015
  • synonyms

    • @ref: 20215
    • synonym: Flaviaesturariibacter amylovorans

@ref: 24007

domain: Bacteria

phylum: Bacteroidetes

class: Chitinophagia

order: Sphingobacteriales

family: Chitinophagaceae

genus: Flaviaesturariibacter

species: Flaviaesturariibacter amylovorans

full scientific name: Flaviaesturariibacter amylovorans Kang et al. 2015

strain designation: GCR0105

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 24007
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
24007positivegrowth30mesophilic
67770positivegrowth25mesophilic

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
24007Water of the Mangyung estuary enclosed by the Saemangeum EmbankmentJEOLlabuk-doRepublic of KoreaKORAsia
67770Water of the Mangyung estuary enclosed by the Saemangeum Embankmentlocated in JEOLlabuk-doRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Estuary

taxonmaps

  • @ref: 69479
  • File name: preview.99_58834.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_185;96_26009;97_32634;98_41861;99_58834&stattab=map
  • Last taxonomy: Flaviaesturariibacter amylovorans subclade
  • 16S sequence: JN607160
  • Sequence Identity:
  • Total samples: 757
  • soil counts: 513
  • aquatic counts: 107
  • animal counts: 29
  • plant counts: 108

Safety information

risk assessment

  • @ref: 24007
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24007
  • description: Flaviaesturariibacter amylovorans strain GCR0105 16S ribosomal RNA gene, partial sequence
  • accession: JN607160
  • length: 1387
  • database: ena
  • NCBI tax ID: 1084520

GC content

@refGC-contentmethod
2400742.9
6777042.9high performance liquid chromatography (HPLC)

External links

@ref: 24007

culture collection no.: DSM 103129, JCM 17919, KACC 16454

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny25858251Flaviaesturariibacter amylovorans gen. nov., sp. nov., a starch-hydrolysing bacterium, isolated from estuarine water.Kang JY, Chun J, Seo JW, Kim CH, Jahng KYInt J Syst Evol Microbiol10.1099/ijs.0.0002492015Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, *Estuaries, Fatty Acids/chemistry, Molecular Sequence Data, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Spermidine/analogs & derivatives/chemistry, Starch/metabolism, Vitamin K 2/analogs & derivatives/chemistry, *Water MicrobiologyGenetics
Phylogeny28632115Flaviaesturariibacter luteus sp. nov., isolated from an agricultural floodplain soil, and emended description of the genus Flaviaesturariibacter.Pascual J, Foesel BU, Geppert A, Huber KJ, Overmann JInt J Syst Evol Microbiol10.1099/ijsem.0.0018542017Agriculture, Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Namibia, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny28809148Flaviaesturariibacter terrae sp. nov., isolated from mountain soil.Okiria J, Lee JJ, Park SJ, Lee YH, Lee SY, Park S, Kim BO, Ten LN, Jung HYInt J Syst Evol Microbiol10.1099/ijsem.0.0019962017Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24007Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-103129Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103129)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/