Strain identifier
BacDive ID: 132218
Type strain:
Species: Flaviaestuariibacter amylovorans
Strain Designation: GCR0105
Strain history: K. Y. Jahng GCR0105.
NCBI tax ID(s): 1084520 (species)
General
@ref: 24007
BacDive-ID: 132218
DSM-Number: 103129
keywords: 16S sequence, Bacteria, mesophilic
description: Flaviaestuariibacter amylovorans GCR0105 is a mesophilic bacterium that was isolated from Water of the Mangyung estuary enclosed by the Saemangeum Embankment.
NCBI tax id
- NCBI tax id: 1084520
- Matching level: species
strain history
@ref | history |
---|---|
24007 | <- JCM; JCM 17919 <- K.Y. Jahng, Chonbuk National Univ., Dept. of Life Scs., Jeonju-si, Korea; GCR0105 |
67770 | K. Y. Jahng GCR0105. |
doi: 10.13145/bacdive132218.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Chitinophagia
- order: Chitinophagales
- family: Chitinophagaceae
- genus: Flaviaestuariibacter
- species: Flaviaestuariibacter amylovorans
- full scientific name: Flaviaestuariibacter amylovorans corrig. Kang et al. 2015
synonyms
- @ref: 20215
- synonym: Flaviaesturariibacter amylovorans
@ref: 24007
domain: Bacteria
phylum: Bacteroidetes
class: Chitinophagia
order: Sphingobacteriales
family: Chitinophagaceae
genus: Flaviaesturariibacter
species: Flaviaesturariibacter amylovorans
full scientific name: Flaviaesturariibacter amylovorans Kang et al. 2015
strain designation: GCR0105
type strain: yes
Culture and growth conditions
culture medium
- @ref: 24007
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
24007 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 25 | mesophilic |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
24007 | Water of the Mangyung estuary enclosed by the Saemangeum Embankment | JEOLlabuk-do | Republic of Korea | KOR | Asia |
67770 | Water of the Mangyung estuary enclosed by the Saemangeum Embankment | located in JEOLlabuk-do | Republic of Korea | KOR | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Estuary
taxonmaps
- @ref: 69479
- File name: preview.99_58834.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_185;96_26009;97_32634;98_41861;99_58834&stattab=map
- Last taxonomy: Flaviaesturariibacter amylovorans subclade
- 16S sequence: JN607160
- Sequence Identity:
- Total samples: 757
- soil counts: 513
- aquatic counts: 107
- animal counts: 29
- plant counts: 108
Safety information
risk assessment
- @ref: 24007
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24007
- description: Flaviaesturariibacter amylovorans strain GCR0105 16S ribosomal RNA gene, partial sequence
- accession: JN607160
- length: 1387
- database: ena
- NCBI tax ID: 1084520
GC content
@ref | GC-content | method |
---|---|---|
24007 | 42.9 | |
67770 | 42.9 | high performance liquid chromatography (HPLC) |
External links
@ref: 24007
culture collection no.: DSM 103129, JCM 17919, KACC 16454
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 25858251 | Flaviaesturariibacter amylovorans gen. nov., sp. nov., a starch-hydrolysing bacterium, isolated from estuarine water. | Kang JY, Chun J, Seo JW, Kim CH, Jahng KY | Int J Syst Evol Microbiol | 10.1099/ijs.0.000249 | 2015 | Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, *Estuaries, Fatty Acids/chemistry, Molecular Sequence Data, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Spermidine/analogs & derivatives/chemistry, Starch/metabolism, Vitamin K 2/analogs & derivatives/chemistry, *Water Microbiology | Genetics |
Phylogeny | 28632115 | Flaviaesturariibacter luteus sp. nov., isolated from an agricultural floodplain soil, and emended description of the genus Flaviaesturariibacter. | Pascual J, Foesel BU, Geppert A, Huber KJ, Overmann J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001854 | 2017 | Agriculture, Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Namibia, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Phylogeny | 28809148 | Flaviaesturariibacter terrae sp. nov., isolated from mountain soil. | Okiria J, Lee JJ, Park SJ, Lee YH, Lee SY, Park S, Kim BO, Ten LN, Jung HY | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001996 | 2017 | Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
24007 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103129 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103129) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |