Strain identifier
BacDive ID: 132213
Type strain:
Species: Actinomadura syzygii
Strain history: <- NBRC; NBRC 110399 <- BCC; BCC 70456 <- A. Thamchaipenet; GKU 157
NCBI tax ID(s): 1427538 (species)
General
@ref: 24002
BacDive-ID: 132213
DSM-Number: 102118
keywords: 16S sequence, Bacteria, mesophilic
description: Actinomadura syzygii DSM 102118 is a mesophilic bacterium that was isolated from Roots of a jambolan plum tree, Syzygium cumini.
NCBI tax id
- NCBI tax id: 1427538
- Matching level: species
strain history
- @ref: 24002
- history: <- NBRC; NBRC 110399 <- BCC; BCC 70456 <- A. Thamchaipenet; GKU 157
doi: 10.13145/bacdive132213.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Streptosporangiales
- family: Thermomonosporaceae
- genus: Actinomadura
- species: Actinomadura syzygii
- full scientific name: Actinomadura syzygii Rachniyom et al. 2015
@ref: 24002
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Thermomonosporaceae
genus: Actinomadura
species: Actinomadura syzygii
full scientific name: Actinomadura syzygii Rachniyom et al. 2015
type strain: yes
Morphology
multimedia
- @ref: 24002
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_102118.jpg
- caption: Medium 554 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 24002
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
- @ref: 24002
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 24002
- sample type: Roots of a jambolan plum tree, Syzygium cumini
- host species: Syzygium cumini
- geographic location: Khao Khitchakut National Park, Chantaburi
- country: Thailand
- origin.country: THA
- continent: Asia
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Tree |
#Host Body-Site | #Plant | #Root (Rhizome) |
Safety information
risk assessment
- @ref: 24002
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24002
- description: Actinomadura syzygii strain GKU 157 16S ribosomal RNA gene, partial sequence
- accession: KF667496
- length: 1507
- database: ena
- NCBI tax ID: 1427538
GC content
- @ref: 24002
- GC-content: 73.1
- method: high performance liquid chromatography (HPLC)
External links
@ref: 24002
culture collection no.: DSM 102118, BCC 70456, NBRC 110399, GKU 157
straininfo link
- @ref: 90566
- straininfo: 397822
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 25805630 | Actinomadura syzygii sp. nov., an endophytic actinomycete isolated from the roots of a jambolan plum tree (Syzygium cumini L. Skeels). | Rachniyom H, Matsumoto A, Indananda C, Duangmal K, Takahashi Y, Thamchaipenet A | Int J Syst Evol Microbiol | 10.1099/ijs.0.000203 | 2015 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Endophytes/classification/genetics/isolation & purification, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Syzygium/*microbiology, Thailand, Trees/microbiology, Vitamin K 2/analogs & derivatives/chemistry | Enzymology |
Phylogeny | 32724099 | Actinomadura decatromicini sp. nov., isolated from mountain soil in Thailand. | Songsumanus A, Kuncharoen N, Kudo T, Yuki M, Ohkuma M, Igarashi Y, Tanasupawat S | J Antibiot (Tokyo) | 10.1038/s41429-020-0353-y | 2020 | Actinomadura/*genetics/*isolation & purification/ultrastructure, Genome, Fungal, Phylogeny, *Soil Microbiology, Thailand | Genetics |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
24002 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102118 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102118) | |
90566 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397822.1 |