Strain identifier
BacDive ID: 132211
Type strain: 
Species: Luteolibacter arcticus
Strain Designation: MC 3726
Strain history: <- M. Kim, CCTCC; CCTCC AB2014275
NCBI tax ID(s): 1581411 (species)
version 9.3 (current version)
General
@ref: 24000
BacDive-ID: 132211
DSM-Number: 102244
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Luteolibacter arcticus MC 3726 is a mesophilic, Gram-negative bacterium that was isolated from high Arctic tundra near the settlement Ny-A°lesund.
NCBI tax id
- NCBI tax id: 1581411
- Matching level: species
strain history
- @ref: 24000
- history: <- M. Kim, CCTCC; CCTCC AB2014275
doi: 10.13145/bacdive132211.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/verrucomicrobiota
- domain: Bacteria
- phylum: Verrucomicrobiota
- class: Verrucomicrobiia
- order: Verrucomicrobiales
- family: Verrucomicrobiaceae
- genus: Luteolibacter
- species: Luteolibacter arcticus
- full scientific name: Luteolibacter arcticus Kim et al. 2015
@ref: 24000
domain: Bacteria
phylum: Verrucomicrobia
class: Verrucomicrobiae
order: Verrucomicrobiales
family: Verrucomicrobiaceae
genus: Luteolibacter
species: Luteolibacter arcticus
full scientific name: Luteolibacter arcticus Kim et al. 2015
strain designation: MC 3726
type strain: yes
Morphology
cell morphology
- @ref: 125438
- gram stain: negative
- confidence: 91.995
Culture and growth conditions
culture medium
- @ref: 24000
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 24000
- growth: positive
- type: growth
- temperature: 28
Isolation, sampling and environmental information
isolation
- @ref: 24000
- sample type: high Arctic tundra near the settlement Ny-A°lesund
- geographic location: Svalbard Archipelago
- country: Norway
- origin.country: NOR
- continent: Europe
- latitude: 78.8833
- longitude: 12.15
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Tundra |
| #Climate | #Cold | #Polar |
taxonmaps
- @ref: 69479
- File name: preview.99_16219.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_545;96_2822;97_9951;98_12234;99_16219&stattab=map
- Last taxonomy: Luteolibacter arcticus subclade
- 16S sequence: KP101281
- Sequence Identity:
- Total samples: 148
- soil counts: 41
- aquatic counts: 79
- animal counts: 4
- plant counts: 24
Safety information
risk assessment
- @ref: 24000
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24000
- description: Luteolibacter arcticus strain MC 3726 16S ribosomal RNA gene, partial sequence
- accession: KP101281
- length: 1443
- database: nuccore
- NCBI tax ID: 1581411
Genome sequences
- @ref: 66792
- description: Luteolibacter arcticus CCTCC AB 2014275
- accession: GCA_025950235
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1581411
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 91.995 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 92.348 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 77.837 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 82.533 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 93.427 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 74.935 | no |
External links
@ref: 24000
culture collection no.: DSM 102244, CCTCC AB 2014275
straininfo link
- @ref: 90564
- straininfo: 396955
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25795066 | Luteolibacter arcticus sp. nov., isolated from high Arctic tundra soil, and emended description of the genus Luteolibacter. | Kim M, Pak S, Rim S, Ren L, Jiang F, Chang X, Liu P, Zhang Y, Fang C, Zheng C, Peng F | Int J Syst Evol Microbiol | 10.1099/ijs.0.000202 | 2015 | Arctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Svalbard, *Tundra, Verrucomicrobia/*classification/genetics/isolation & purification, Vitamin K 2/chemistry | Genetics |
| Phylogeny | 27911253 | Luteolibacter flavescens sp. nov., isolated from deep seawater. | Zhang C, Dong B, Wang R, Su Y, Han S, Yu X, Zhao Z, Fu G, Sun C, Wu M | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001713 | 2017 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Verrucomicrobia/*classification/growth & development/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 32964255 | Luteolibacter luteus sp. nov., isolated from stream bank soil. | Dahal RH, Chaudhary DK, Kim DU, Kim J | Arch Microbiol | 10.1007/s00203-020-02048-x | 2020 | Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rivers, *Soil Microbiology, Species Specificity, Verrucomicrobia/*classification/genetics | |
| Phylogeny | 36256567 | Luteolibacter marinus sp. nov., a novel bacterium in the family Verrucomicrobiaceae, isolated from marine sediment. | Xie F, Zhu S, Guo C, Liu X, He S, Zhang W | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005544 | 2022 | Adolescent, Child, Humans, RNA, Ribosomal, 16S/genetics, Phylogeny, *Phosphatidylethanolamines, Catalase/genetics, Base Composition, *Cardiolipins, Caseins, DNA, Bacterial/genetics, Bacterial Typing Techniques, Fatty Acids/chemistry, Sequence Analysis, DNA, Geologic Sediments/microbiology, Quinones, Nucleotides, Starch, Phospholipids/chemistry | Pathogenicity |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24000 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102244 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102244) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 90564 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID396955.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |