Strain identifier
BacDive ID: 132209
Type strain: 
Species: Glycomyces tarimensis
Strain history: L.-L. Zhang; Tarim Univ., China; TRM 45387.
NCBI tax ID(s): 1268671 (species)
version 9 (current version)
General
@ref: 23998
BacDive-ID: 132209
DSM-Number: 104087
keywords: 16S sequence, Bacteria
description: Glycomyces tarimensis DSM 104087 is a bacterium that was isolated from saline-alkali soil.
NCBI tax id
- NCBI tax id: 1268671
- Matching level: species
strain history
| @ref | history |
|---|---|
| 23998 | <- CCTCC; CCTCC AA 2014007 |
| 67770 | L.-L. Zhang; Tarim Univ., China; TRM 45387. |
doi: 10.13145/bacdive132209.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Glycomycetales
- family: Glycomycetaceae
- genus: Glycomyces
- species: Glycomyces tarimensis
- full scientific name: Glycomyces tarimensis Lv et al. 2015
@ref: 23998
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Glycomycetaceae
genus: Glycomyces
species: Glycomyces tarimensis
full scientific name: Glycomyces tarimensis Lv et al. 2015
type strain: yes
Morphology
multimedia
- @ref: 23998
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_104087.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 23998 | CZAPEK PEPTONE AGAR (DSMZ Medium 83) | yes | https://mediadive.dsmz.de/medium/83 | Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water |
| 23998 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 23998 | positive | growth | 28 |
| 67770 | positive | growth | 37 |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-10(H6)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 23998 | saline-alkali soil | Xinjiang Province, Kalpin county (40° 22' N, 79° 8' E) | China | CHN | Asia | 40.3667 | 79.1333 |
| 67770 | Saline-alkali soil | Xinjiang Province, north-west China | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Condition | #Alkaline | |
| #Condition | #Saline |
Safety information
risk assessment
- @ref: 23998
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 23998
- description: Glycomyces tarimensis strain TRM 45387 16S ribosomal RNA gene, partial sequence
- accession: KC112995
- length: 1481
- database: nuccore
- NCBI tax ID: 1268671
GC content
- @ref: 23998
- GC-content: 71.26
- method: high performance liquid chromatography (HPLC)
External links
@ref: 23998
culture collection no.: DSM 104087, CCTCC AA 2014007, JCM 30184, TRM 45387, CGMCC 4.7184
straininfo link
- @ref: 90562
- straininfo: 407515
literature
- topic: Phylogeny
- Pubmed-ID: 25713037
- title: Glycomyces tarimensis sp. nov., an actinomycete isolated from a saline-alkali habitat.
- authors: Lv LL, Zhang YF, Zhang LL
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000143
- year: 2015
- mesh: Actinomycetales/*classification/genetics/isolation & purification, Alkalies, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistry
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23998 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-104087 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104087) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 90562 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407515.1 |