Strain identifier

BacDive ID: 132206

Type strain: Yes

Species: Vibrio tritonius

Strain Designation: AM2

Strain history: T. Sawabe AM2.

NCBI tax ID(s): 1435069 (species)

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General

@ref: 23995

BacDive-ID: 132206

DSM-Number: 101558

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative

description: Vibrio tritonius AM2 is a mesophilic, Gram-negative bacterium that was isolated from gut of sea hare .

NCBI tax id

  • NCBI tax id: 1435069
  • Matching level: species

strain history

@refhistory
23995<- T. Sawabe, University of Hokkaido, Japan; AM2
67770T. Sawabe MA12.
67770T. Sawabe AM2.

doi: 10.13145/bacdive132206.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio tritonius
  • full scientific name: Vibrio tritonius Sawabe et al. 2015

@ref: 23995

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales, not validated

family: Vibrionaceae

genus: Vibrio

species: Vibrio tritonius

full scientific name: Vibrio tritonius Sawabe et al. 2015

strain designation: AM2

type strain: yes

Morphology

cell morphology

@refgram stainconfidence
125439negative99.1
125438negative99

Culture and growth conditions

culture medium

  • @ref: 23995
  • name: MARINE BROTH (ROTH CP73) (DSMZ Medium 514f)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514f.pdf

culture temp

@refgrowthtypetemperature
23995positivegrowth28
67770positivegrowth25

Physiology and metabolism

oxygen tolerance

  • @ref: 125439
  • oxygen tolerance: obligate aerobe
  • confidence: 97.3

spore formation

  • @ref: 125439
  • spore formation: no
  • confidence: 98.9

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836917306maltose+assimilation
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose+fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase-1.9.3.1
68369gelatinase+
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
23995+-+--++++++++++--++--

Isolation, sampling and environmental information

isolation

@refsample typehost speciescountryorigin.countrycontinent
23995gut of sea hare (Aplysia kurodai)Aplysia kurodaiJapanJPNAsia
67770Gut of a sea hare, Aplysia kurodaiAplysia kurodai

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Host#Invertebrates (Other)#Mollusca
#Host Body-Site#Gastrointestinal tract#Stomach

Safety information

risk assessment

  • @ref: 23995
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 23995
  • description: Vibrio tritonius strain AM2 16S ribosomal RNA gene, partial sequence
  • accession: GU951698
  • length: 1432
  • database: nuccore
  • NCBI tax ID: 1435069

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Vibrio tritonius AM2GCA_001547935completencbi1435069
66792Vibrio tritonius strain JCM 164561435069.3completepatric1435069
66792Vibrio tritonius AM22671180348completeimg1435069

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno99no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no89.625no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no71.784no
125438spore-formingspore-formingAbility to form endo- or exosporesno86.752no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno97.5no
125438motile2+flagellatedAbility to perform flagellated movementyes86.435no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno98.9
125439BacteriaNetmotilityAbility to perform movementyes81
125439BacteriaNetgram_stainReaction to gram-stainingnegative99.1
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe97.3

External links

@ref: 23995

culture collection no.: DSM 101558, LMG 25401, JCM 16456, JCM 16459

straininfo link

  • @ref: 90559
  • straininfo: 363831

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny31702534Vibrio sinensis sp. nov. and Vibrio viridaestus sp. nov., two marine bacteria isolated from the East China Sea.Li Y, Liang J, Liu R, Xue CX, Zhou S, He X, Li B, Wang X, Zhang XHInt J Syst Evol Microbiol10.1099/ijsem.0.0038422020Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Multilocus Sequence Typing, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vibrio/*classification/isolation & purificationTranscriptome
Phylogeny36269578Vibrio ostreae sp. nov., a novel gut bacterium isolated from a Yellow Sea oyster.Muhammad N, Nguyen TTH, Lee YJ, Ko J, Avila F, Kim SGInt J Syst Evol Microbiol10.1099/ijsem.0.0055862022Animals, Bacterial Typing Techniques, Base Composition, Cardiolipins, Catalase/genetics, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleotides, *Ostreidae/microbiology, Phosphatidylethanolamines, Phospholipids/chemistry, Phylogeny, Quinones, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride, *Vibrio/genetics/isolation & purificationTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23995Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-101558Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101558)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
90559Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID363831.1
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG