Strain identifier

BacDive ID: 1322

Type strain: Yes

Species: Bacillus manliponensis

Strain Designation: BL4-6

Strain history: CIP <- 2016, JCM <- 2008, Y.H. Chang, KRIBB, Daejon, Korea: strain BL4-6

NCBI tax ID(s): 574376 (species)

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General

@ref: 18236

BacDive-ID: 1322

DSM-Number: 26473

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, motile, rod-shaped

description: Bacillus manliponensis BL4-6 is an aerobe, spore-forming, mesophilic bacterium that was isolated from foreshore tidal flat sediment.

NCBI tax id

  • NCBI tax id: 574376
  • Matching level: species

strain history

@refhistory
18236<- KCTC; KCTC 13319
67770Y.-H. Chang BL4-6.
67771<- YH Chang, KRIBB
120778CIP <- 2016, JCM <- 2008, Y.H. Chang, KRIBB, Daejon, Korea: strain BL4-6

doi: 10.13145/bacdive1322.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Bacillus
  • species: Bacillus manliponensis
  • full scientific name: Bacillus manliponensis Jung et al. 2021

@ref: 18236

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Bacillus

species: Bacillus manliponensis

full scientific name: Bacillus manliponensis Jung et al. 2011

strain designation: BL4-6

type strain: yes

Morphology

cell morphology

@refcell shapemotilityflagellum arrangementgram stain
67771rod-shapedyesperitrichous
67771positive
120778rod-shapednopositive

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41619MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
18236NUTRIENT AGAR (DSMZ Medium 1)yesName: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/1
120778CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
18236positivegrowth30mesophilic
41619positivegrowth30mesophilic
67770positivegrowth30mesophilic
67771positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

spore formation

  • @ref: 67771
  • type of spore: endospore
  • spore formation: yes

observation

@refobservation
67770quinones: MK-7
67771quinones: MK-7

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
18236foreshore tidal flat sedimentYellow Sea, Malipo, Tae-An regionRepublic of KoreaKORAsia
67770Oil-contaminated tidal flat sediment, Malipo beach in Tae-Ana coastal region of the Yellow SeaRepublic of KoreaKORAsia
67771From seawaterTaeahnRepublic of KoreaKORAsia
120778Environment, Oil contaminated tidal flat sedimentMalipo beach in Tae-An, a coastal region of the Yellow SeaRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Sediment
#Environmental#Terrestrial#Tidal flat

taxonmaps

  • @ref: 69479
  • File name: preview.99_22375.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_21;97_22;98_16868;99_22375&stattab=map
  • Last taxonomy: Bacillus
  • 16S sequence: FJ416490
  • Sequence Identity:
  • Total samples: 7
  • soil counts: 2
  • animal counts: 3
  • plant counts: 2

Safety information

risk assessment

  • @ref: 120778
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 18236
  • description: Bacillus manliponensis strain BL4-6 16S ribosomal RNA gene, partial sequence
  • accession: FJ416490
  • length: 1400
  • database: ena
  • NCBI tax ID: 574376

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bacillus manliponensis strain JCM 15802574376.4wgspatric574376
66792Bacillus manliponensis JCM 158022585428017draftimg574376
67770Bacillus manliponensis JCM 15802GCA_000712595contigncbi574376

GC content

@refGC-contentmethod
1823638.0
6777038thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveyes89.956yes
anaerobicno98.626yes
halophileno83.381no
spore-formingyes93.401yes
glucose-utilyes89.521no
thermophileno99.397yes
motileyes77.062yes
flagellatedyes81.947yes
aerobicyes85.513yes
glucose-fermentno91.115no

External links

@ref: 18236

culture collection no.: DSM 26473, JCM 15802, KCTC 13319, CIP 111019

straininfo link

@refstraininfo
70971400869
70972412437

literature

  • topic: Phylogeny
  • Pubmed-ID: 22203569
  • title: Bacillus manliponensis sp. nov., a new member of the Bacillus cereus group isolated from foreshore tidal flat sediment.
  • authors: Jung MY, Kim JS, Paek WK, Lim J, Lee H, Kim PI, Ma JY, Kim W, Chang YH
  • journal: J Microbiol
  • DOI: 10.1007/s12275-011-1049-6
  • year: 2011
  • mesh: Bacillus cereus/classification/genetics/*isolation & purification/metabolism, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
18236Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26473)https://www.dsmz.de/collection/catalogue/details/culture/DSM-26473
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
41619Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/34631
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
70971Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID400869.1StrainInfo: A central database for resolving microbial strain identifiers
70972Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID412437.1StrainInfo: A central database for resolving microbial strain identifiers
120778Curators of the CIPCollection of Institut Pasteur (CIP 111019)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20111019