Strain identifier
BacDive ID: 132199
Type strain:
Species: Acinetobacter seifertii
Strain Designation: Gerner-Smidt 10090
Strain history: CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 973
NCBI tax ID(s): 1530123 (species)
General
@ref: 23988
BacDive-ID: 132199
DSM-Number: 102854
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, oval-shaped
description: Acinetobacter seifertii Gerner-Smidt 10090 is a mesophilic, Gram-negative, oval-shaped bacterium that was isolated from ulcer .
NCBI tax id
- NCBI tax id: 1530123
- Matching level: species
strain history
@ref | history |
---|---|
36465 | 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 973 |
23988 | <- CCM; CCM 8535 <- A. Nemec; NIPH 973 <- P. Gerner-Smidt; Gerner-Smidt 10090 |
122551 | CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 973 |
doi: 10.13145/bacdive132199.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Acinetobacter
- species: Acinetobacter seifertii
- full scientific name: Acinetobacter seifertii Nemec et al. 2015
@ref: 23988
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Acinetobacter
species: Acinetobacter seifertii
full scientific name: Acinetobacter seifertii Nemec et al. 2015
strain designation: Gerner-Smidt 10090
type strain: yes
Morphology
cell morphology
- @ref: 122551
- gram stain: negative
- cell shape: oval-shaped
- motility: no
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
36465 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
23988 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water | https://mediadive.dsmz.de/medium/535 |
23988 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | https://mediadive.dsmz.de/medium/693 |
122551 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
36465 | positive | growth | 30 | mesophilic |
52318 | no | growth | 44 | thermophilic |
23988 | positive | growth | 37 | mesophilic |
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | + | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16899 | D-mannitol | - | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | - | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | + | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68369 | cytochrome oxidase | - | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | - | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
23988 | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | + | - | + | + | + | - |
23988 | - | - | + | - | - | - | - | - | +/- | - | - | - | - | - | +/- | + | - | + | + | + | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | isolation date |
---|---|---|---|---|---|
23988 | ulcer (human patient) | Denmark | DNK | Europe | |
52318 | Human ulcer | Denmark | DNK | Europe | |
122551 | Human, Ulcer | Denmark | DNK | Europe | 1990 |
isolation source categories
Cat1 | Cat2 |
---|---|
#Infection | #Inflammation |
#Infection | #Patient |
#Host | #Human |
taxonmaps
- @ref: 69479
- File name: preview.99_95.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_8;96_11;97_38;98_86;99_95&stattab=map
- Last taxonomy: Acinetobacter
- 16S sequence: FJ860878
- Sequence Identity:
- Total samples: 46266
- soil counts: 7889
- aquatic counts: 12125
- animal counts: 20278
- plant counts: 5974
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
23988 | 2 | Risk group (German classification) |
122551 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 23988
- description: Acinetobacter seifertii strain LUH 1472 16S ribosomal RNA gene, partial sequence
- accession: FJ860878
- length: 1460
- database: ena
- NCBI tax ID: 1530123
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Acinetobacter seifertii NIPH 973 | GCA_000368065 | scaffold | ncbi | 1530123 |
66792 | Acinetobacter sp. NIPH 973 | 520709.3 | wgs | patric | 1530123 |
66792 | Acinetobacter seifertii NIPH 973 | 2565956690 | draft | img | 1530123 |
GC content
- @ref: 23988
- GC-content: 38.3
- method: sequence analysis
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 89.578 | no |
flagellated | no | 94.125 | no |
gram-positive | no | 97.329 | no |
anaerobic | no | 98.655 | no |
aerobic | yes | 93.325 | no |
halophile | no | 83.012 | no |
spore-forming | no | 96.301 | no |
thermophile | no | 99.936 | no |
glucose-util | no | 62.992 | no |
glucose-ferment | no | 79.482 | no |
External links
@ref: 23988
culture collection no.: DSM 102854, CCM 8535, CCUG 34785, CIP 110471, NIPH 973, NIPH 973 (straininfo link
literature
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
23988 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102854 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102854) | |
36465 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/8333 | ||
52318 | Curators of the CCUG | https://www.ccug.se/strain?id=34785 | Culture Collection University of Gothenburg (CCUG) (CCUG 34785) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
68369 | Automatically annotated from API 20NE | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
90553 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID51010.1 | |
122551 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110471 | Collection of Institut Pasteur (CIP 110471) |