Strain identifier

BacDive ID: 132190

Type strain: Yes

Species: Streptomyces lopnurensis

Strain history: <- CCTCC; CCTCC AA2013018

NCBI tax ID(s): 1495572 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 23979

BacDive-ID: 132190

DSM-Number: 103492

keywords: 16S sequence, Bacteria, mesophilic

description: Streptomyces lopnurensis DSM 103492 is a mesophilic bacterium that was isolated from soil sample.

NCBI tax id

  • NCBI tax id: 1495572
  • Matching level: species

strain history

  • @ref: 23979
  • history: <- CCTCC; CCTCC AA2013018

doi: 10.13145/bacdive132190.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces lopnurensis
  • full scientific name: Streptomyces lopnurensis Zheng et al. 2014

@ref: 23979

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces lopnurensis

full scientific name: Streptomyces lopnurensis Zheng et al. 2014

type strain: yes

Morphology

multimedia

  • @ref: 23979
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_103492.jpg
  • caption: Medium 65 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 23979
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

  • @ref: 23979
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 23979
  • sample type: soil sample
  • geographic location: Lop Nur, Xinjiang
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 39.5833
  • longitude: 89.7667

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_116573.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_18781;97_59303;98_78766;99_116573&stattab=map
  • Last taxonomy: Streptomyces lopnurensis subclade
  • 16S sequence: AB932597
  • Sequence Identity:
  • Total samples: 19
  • soil counts: 7
  • aquatic counts: 2
  • animal counts: 8
  • plant counts: 2

Safety information

risk assessment

  • @ref: 23979
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 23979
  • description: Streptomyces lopnurensis gene for 16S ribosomal RNA, partial sequence
  • accession: AB932597
  • length: 1521
  • database: ena
  • NCBI tax ID: 1495572

GC content

  • @ref: 23979
  • GC-content: 62.15
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 23979

culture collection no.: DSM 103492, CCTCC AA 2013018, NRRL B59109, TRM 49590

straininfo link

  • @ref: 90544
  • straininfo: 403854

literature

  • topic: Phylogeny
  • Pubmed-ID: 25253072
  • title: Streptomyces lopnurensis sp. nov., an actinomycete isolated from soil.
  • authors: Zheng B, Han XX, Xia ZF, Wan CX, Zhang LL
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.066357-0
  • year: 2014
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23979Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-103492Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103492)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
90544Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID403854.1