Strain identifier
BacDive ID: 132190
Type strain:
Species: Streptomyces lopnurensis
Strain history: <- CCTCC; CCTCC AA2013018
NCBI tax ID(s): 1495572 (species)
version 8.1 (current version)
General
@ref: 23979
BacDive-ID: 132190
DSM-Number: 103492
keywords: 16S sequence, Bacteria, mesophilic
description: Streptomyces lopnurensis DSM 103492 is a mesophilic bacterium that was isolated from soil sample.
NCBI tax id
- NCBI tax id: 1495572
- Matching level: species
strain history
- @ref: 23979
- history: <- CCTCC; CCTCC AA2013018
doi: 10.13145/bacdive132190.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces lopnurensis
- full scientific name: Streptomyces lopnurensis Zheng et al. 2014
@ref: 23979
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces lopnurensis
full scientific name: Streptomyces lopnurensis Zheng et al. 2014
type strain: yes
Morphology
multimedia
- @ref: 23979
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_103492.jpg
- caption: Medium 65 37°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 23979
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
- @ref: 23979
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23979
- sample type: soil sample
- geographic location: Lop Nur, Xinjiang
- country: China
- origin.country: CHN
- continent: Asia
- latitude: 39.5833
- longitude: 89.7667
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_116573.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_18781;97_59303;98_78766;99_116573&stattab=map
- Last taxonomy: Streptomyces lopnurensis subclade
- 16S sequence: AB932597
- Sequence Identity:
- Total samples: 19
- soil counts: 7
- aquatic counts: 2
- animal counts: 8
- plant counts: 2
Safety information
risk assessment
- @ref: 23979
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 23979
- description: Streptomyces lopnurensis gene for 16S ribosomal RNA, partial sequence
- accession: AB932597
- length: 1521
- database: ena
- NCBI tax ID: 1495572
GC content
- @ref: 23979
- GC-content: 62.15
- method: high performance liquid chromatography (HPLC)
External links
@ref: 23979
culture collection no.: DSM 103492, CCTCC AA 2013018, NRRL B59109, TRM 49590
straininfo link
- @ref: 90544
- straininfo: 403854
literature
- topic: Phylogeny
- Pubmed-ID: 25253072
- title: Streptomyces lopnurensis sp. nov., an actinomycete isolated from soil.
- authors: Zheng B, Han XX, Xia ZF, Wan CX, Zhang LL
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.066357-0
- year: 2014
- mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/chemistry
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
23979 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103492 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103492) | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
90544 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403854.1 |