Strain identifier

BacDive ID: 132188

Type strain: Yes

Species: Streptomyces hokutonensis

Strain Designation: R1-NS-10

Strain history: <- KCTC; KCTC 29186

NCBI tax ID(s): 1306990 (species)

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General

@ref: 23977

BacDive-ID: 132188

DSM-Number: 102214

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Streptomyces hokutonensis R1-NS-10 is a mesophilic bacterium that was isolated from sample of strawberry root rhizosphere.

NCBI tax id

  • NCBI tax id: 1306990
  • Matching level: species

strain history

  • @ref: 23977
  • history: <- KCTC; KCTC 29186

doi: 10.13145/bacdive132188.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces hokutonensis
  • full scientific name: Streptomyces hokutonensis Yamamura et al. 2014

@ref: 23977

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces hokutonensis

full scientific name: Streptomyces hokutonensis Yamamura et al. 2014

strain designation: R1-NS-10

type strain: yes

Morphology

multimedia

  • @ref: 23977
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_102214.jpg
  • caption: Medium 84 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 23977
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

  • @ref: 23977
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 23977
  • sample type: sample of strawberry root rhizosphere
  • geographic location: Hokuto, Yamanashi
  • country: Japan
  • origin.country: JPN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Rhizosphere
#Host Body-Site#Plant#Root (Rhizome)

taxonmaps

  • @ref: 69479
  • File name: preview.99_940.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_118;99_940&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AB808756
  • Sequence Identity:
  • Total samples: 63
  • soil counts: 48
  • aquatic counts: 4
  • plant counts: 11

Safety information

risk assessment

  • @ref: 23977
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 23977
  • description: Streptomyces hokutonensis gene for 16S ribosomal RNA, partial sequence
  • accession: AB808756
  • length: 1495
  • database: ena
  • NCBI tax ID: 1306990

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces hokutonensis R1-NS-10GCA_000376565contigncbi1306990
66792Streptomyces hokutonensis R1-NS-102602041786draftimg1306990

GC content

  • @ref: 23977
  • GC-content: 71.2
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 23977

culture collection no.: DSM 102214, KCTC 29186, NBRC 108812

straininfo link

  • @ref: 90542
  • straininfo: 399461

literature

  • topic: Phylogeny
  • Pubmed-ID: 24690912
  • title: Streptomyces hokutonensis sp. nov., a novel actinomycete isolated from the strawberry root rhizosphere.
  • authors: Yamamura H, Ashizawa H, Hamada M, Hosoyama A, Komaki H, Otoguro M, Tamura T, Hayashi Y, Nakagawa Y, Ohtsuki T, Fujita N, Ui S, Hayakawa M
  • journal: J Antibiot (Tokyo)
  • DOI: 10.1038/ja.2014.20
  • year: 2014
  • mesh: DNA, Bacterial/genetics, Fatty Acids/metabolism, Fragaria/metabolism/*microbiology, Japan, Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Rhizosphere, Streptomyces/*classification/genetics/isolation & purification
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23977Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102214Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102214)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
90542Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID399461.1