Strain identifier

BacDive ID: 132178

Type strain: Yes

Species: Enterobacter hormaechei subsp. xiangfangensis

Strain Designation: 10-17

Strain history: <- T. Hain, Justus-Liebig-Universität, Giessen, Germany <- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany <- C. T. Gu, Northeast Agricultural Univ., Harbin, China; 10-17

NCBI tax ID(s): 1296536 (subspecies)

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General

@ref: 23967

BacDive-ID: 132178

DSM-Number: 101093

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic

description: Enterobacter hormaechei subsp. xiangfangensis 10-17 is an aerobe, mesophilic bacterium that was isolated from Sourdough.

NCBI tax id

  • NCBI tax id: 1296536
  • Matching level: subspecies

strain history

  • @ref: 23967
  • history: <- T. Hain, Justus-Liebig-Universität, Giessen, Germany <- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany <- C. T. Gu, Northeast Agricultural Univ., Harbin, China; 10-17

doi: 10.13145/bacdive132178.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Enterobacter
  • species: Enterobacter hormaechei subsp. xiangfangensis
  • full scientific name: Enterobacter hormaechei subsp. xiangfangensis (Gu et al. 2014) Sutton et al. 2018

  • synonyms

    • @ref: 20215
    • synonym: Enterobacter xiangfangensis

@ref: 23967

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Enterobacter

species: Enterobacter hormaechei subsp. xiangfangensis

full scientific name: Enterobacter hormaechei subsp. xiangfangensis (Gu et al. 2014) Sutton et al. 2018

strain designation: 10-17

type strain: yes

Morphology

colony morphology

  • @ref: 62929
  • incubation period: 1 day

Culture and growth conditions

culture medium

  • @ref: 23967
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
23967positivegrowth30mesophilic
62929positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 62929
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836817632nitrate+reduction
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836817997dinitrogenno
6836816301nitriteyes
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOXNO2N2
23967++--+----+-++-++++++-
23967++--+/-----+-++-++++++-+-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
23967SourdoughHeilongjiang ProvinceChinaCHNAsia
62929SourdoughHeilongjiang provinceChinaCHNAsia2010-06-01

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Food production
  • Cat3: #Fermented

taxonmaps

  • @ref: 69479
  • File name: preview.99_120.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_17;99_120&stattab=map
  • Last taxonomy: Enterobacteriaceae
  • 16S sequence: HF679035
  • Sequence Identity:
  • Total samples: 13334
  • soil counts: 615
  • aquatic counts: 1353
  • animal counts: 10132
  • plant counts: 1234

Safety information

risk assessment

  • @ref: 23967
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 23967
  • description: Enterobacter xiangfangensis partial 16S rRNA gene, type strain 10-17T
  • accession: HF679035
  • length: 1429
  • database: ena
  • NCBI tax ID: 1296536

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Enterobacter hormaechei subsp. xiangfangensis LMG27195GCA_001729785completencbi1296536
66792Enterobacter xiangfangensis strain LMG271951296536.16completepatric1296536
66792Enterobacter hormaechei xiangfangensis LMG 271952718217756completeimg1296536

GC content

  • @ref: 23967
  • GC-content: 55.2

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno67.026no
gram-positiveno97.949no
anaerobicno95.876no
aerobicyes86.365yes
halophileno85.111no
spore-formingno92.504no
thermophileno99.429no
glucose-utilyes95.46no
motileyes87.9no
glucose-fermentyes93.311yes

External links

@ref: 23967

culture collection no.: DSM 101093, CCUG 62994, LMG 27195, NCIMB 14836

straininfo link

  • @ref: 90533
  • straininfo: 381219

literature

  • topic: Phylogeny
  • Pubmed-ID: 24824638
  • title: Enterobacter xiangfangensis sp. nov., isolated from Chinese traditional sourdough, and reclassification of Enterobacter sacchari Zhu et al. 2013 as Kosakonia sacchari comb. nov.
  • authors: Gu CT, Li CY, Yang LJ, Huo GC
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.064709-0
  • year: 2014
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Enterobacter/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Fermentation, *Food Microbiology, Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Biotechnology

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23967Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-101093Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101093)
62929Curators of the CCUGhttps://www.ccug.se/strain?id=62994Culture Collection University of Gothenburg (CCUG) (CCUG 62994)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
90533Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID381219.1