Strain identifier
BacDive ID: 132165
Type strain: 
Species: Saccharopolyspora indica
Strain Designation: VRC122
Strain history: <- Radha vaddavalli, Department of Botany, Osmania Univ.,India
NCBI tax ID(s): 1229659 (species)
version 8.1 (current version)
General
@ref: 23954
BacDive-ID: 132165
DSM-Number: 102215
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic
description: Saccharopolyspora indica VRC122 is an aerobe, mesophilic bacterium that was isolated from Callistemon citrinus rizosphere sample.
NCBI tax id
- NCBI tax id: 1229659
- Matching level: species
strain history
| @ref | history |
|---|---|
| 23954 | <- KCTC; KCTC 29208 |
| 67771 | <- Radha vaddavalli, Department of Botany, Osmania Univ.,India |
doi: 10.13145/bacdive132165.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Saccharopolyspora
- species: Saccharopolyspora indica
- full scientific name: Saccharopolyspora indica Vaddavalli et al. 2014
@ref: 23954
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Saccharopolyspora
species: Saccharopolyspora indica
full scientific name: Saccharopolyspora indica Vaddavalli et al. 2014
strain designation: VRC122
type strain: yes
Morphology
multimedia
- @ref: 23954
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_102215.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture temp
- @ref: 67771
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|---|
| 23954 | Callistemon citrinus rizosphere sample | Callistemon citrinus | New Delhi | India | IND | Asia | 28.6139 | 77.2089 |
| 67771 | From Callistemon plant rhizosphere | India | IND | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Shrub (Scrub) |
| #Host Body-Site | #Plant | #Rhizosphere |
taxonmaps
- @ref: 69479
- File name: preview.99_33081.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_5246;97_19583;98_24470;99_33081&stattab=map
- Last taxonomy: Saccharopolyspora indica subclade
- 16S sequence: JX411621
- Sequence Identity:
- Total samples: 253
- soil counts: 221
- aquatic counts: 4
- animal counts: 21
- plant counts: 7
Safety information
risk assessment
- @ref: 23954
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 23954
- description: Saccharopolyspora indica strain VRC122 16S ribosomal RNA gene, partial sequence
- accession: JX411621
- length: 1485
- database: ena
- NCBI tax ID: 1229659
Genome sequences
- @ref: 66792
- description: Saccharopolyspora indica KCTC 29208
- accession: GCA_027853965
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1229659
GC content
- @ref: 23954
- GC-content: 69.5
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 92.586 | no |
| flagellated | no | 97.558 | no |
| gram-positive | yes | 90.839 | no |
| anaerobic | no | 98.948 | no |
| aerobic | yes | 91.037 | yes |
| halophile | yes | 53.188 | no |
| spore-forming | yes | 92.973 | no |
| glucose-ferment | no | 90.86 | no |
| thermophile | no | 96.067 | no |
| glucose-util | yes | 85.779 | no |
External links
@ref: 23954
culture collection no.: DSM 102215, ATCC BAA 2551, KCTC 29208, MCC 2206, MTCC 11564
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24510974 | Saccharopolyspora indica sp. nov., an actinomycete isolated from the rhizosphere of Callistemon citrinus (Curtis). | Vaddavalli R, Peddi S, Kothagauni SY, Begum Z, Gaddam B, Periketi M, Linga VR | Int J Syst Evol Microbiol | 10.1099/ijs.0.057539-0 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, India, Molecular Sequence Data, Myrtaceae/*microbiology, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Saccharopolyspora/*chemistry/genetics/isolation & purification, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 30058993 | Saccharopolyspora maritima sp. nov., an actinomycete isolated from mangrove sediment. | Suksaard P, Srisuk N, Duangmal K | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002941 | 2018 | Avicennia/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Humans, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Saccharopolyspora/*classification/genetics/isolation & purification, Sequence Analysis, DNA, Thailand, Vitamin K 2/analogs & derivatives/chemistry | Pathogenicity |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23954 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102215 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102215) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |