Strain identifier
BacDive ID: 132163
Type strain: 
Species: Roseomonas rhizosphaerae
Strain Designation: YW11
Strain history: <- KACC; KACC 17225 <- J. Gu; YW11
NCBI tax ID(s): 1335062 (species)
version 8.1 (current version)
General
@ref: 23952
BacDive-ID: 132163
DSM-Number: 103151
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Roseomonas rhizosphaerae YW11 is a mesophilic bacterium that was isolated from Soil.
NCBI tax id
- NCBI tax id: 1335062
- Matching level: species
strain history
- @ref: 23952
- history: <- KACC; KACC 17225 <- J. Gu; YW11
doi: 10.13145/bacdive132163.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Roseomonas
- species: Roseomonas rhizosphaerae
- full scientific name: Roseomonas rhizosphaerae Chen et al. 2014
synonyms
- @ref: 20215
- synonym: Pseudoroseomonas rhizosphaerae
@ref: 23952
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Acetobacteraceae
genus: Roseomonas
species: Roseomonas rhizosphaerae
full scientific name: Roseomonas rhizosphaerae Chen et al. 2014
strain designation: YW11
type strain: yes
Culture and growth conditions
culture medium
- @ref: 23952
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 23952
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23952
- sample type: Soil
- geographic location: Jinagsu province, Yangzhou city
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_50860.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_266;96_1135;97_4623;98_5935;99_50860&stattab=map
- Last taxonomy: Roseomonas
- 16S sequence: KC904962
- Sequence Identity:
- Total samples: 33
- soil counts: 2
- aquatic counts: 4
- animal counts: 18
- plant counts: 9
Safety information
risk assessment
- @ref: 23952
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 23952
- description: Roseomonas rhizosphaerae strain YW11 16S ribosomal RNA gene, partial sequence
- accession: KC904962
- length: 1409
- database: ena
- NCBI tax ID: 1335062
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pseudoroseomonas rhizosphaerae YW11 | GCA_002631185 | contig | ncbi | 1335062 |
| 66792 | Roseomonas rhizosphaerae YW11 | 2791355000 | draft | img | 1335062 |
GC content
- @ref: 23952
- GC-content: 69.6
External links
@ref: 23952
culture collection no.: DSM 103151, CCTCC AB 2013041, KACC 17225
straininfo link
- @ref: 90519
- straininfo: 407205
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24408520 | Roseomonas rhizosphaerae sp. nov., a triazophos-degrading bacterium isolated from soil. | Chen Q, Sun LN, Zhang XX, He J, Kwon SW, Zhang J, Li SP, Gu JG | Int J Syst Evol Microbiol | 10.1099/ijs.0.057000-0 | 2014 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Methylobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Organothiophosphates/*metabolism, *Phylogeny, Pigmentation, Sequence Analysis, DNA, *Soil Microbiology, Soil Pollutants/metabolism, Triazoles/*metabolism, Ubiquinone/chemistry | Metabolism |
| Phylogeny | 27381046 | Roseomonas rubra sp. nov., isolated from lagoon sediments. | Subhash Y, Bang JJ, You TH, Lee SS | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001271 | 2016 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Methylobacteriaceae/*classification/genetics/isolation & purification, North Carolina, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 23952 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103151 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103151) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 90519 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407205.1 |