Strain identifier
BacDive ID: 132160
Type strain: 
Species: Streptomyces yaanensis
Strain Designation: Z4
Strain history: <- KCTC; KCTC 29111
NCBI tax ID(s): 1142239 (species)
version 8.1 (current version)
General
@ref: 23949
BacDive-ID: 132160
DSM-Number: 102251
keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, spiral-shaped
description: Streptomyces yaanensis Z4 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1142239
- Matching level: species
strain history
- @ref: 23949
- history: <- KCTC; KCTC 29111
doi: 10.13145/bacdive132160.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces yaanensis
- full scientific name: Streptomyces yaanensis Zheng et al. 2013
@ref: 23949
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces yaanensis
full scientific name: Streptomyces yaanensis Zheng et al. 2013
strain designation: Z4
type strain: yes
Morphology
cell morphology
- @ref: 31170
- gram stain: positive
- cell shape: spiral-shaped
pigmentation
- @ref: 31170
- production: yes
multimedia
- @ref: 23949
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_102251.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 23949
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 23949 | positive | growth | 28 | mesophilic |
| 31170 | positive | growth | 15-45 | |
| 31170 | positive | optimum | 28 | mesophilic |
culture pH
- @ref: 31170
- ability: positive
- type: growth
- pH: 5.0-11.0
- PH range: alkaliphile
Physiology and metabolism
oxygen tolerance
- @ref: 31170
- oxygen tolerance: aerobe
spore formation
- @ref: 31170
- spore formation: yes
halophily
- @ref: 31170
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-4 %
observation
- @ref: 31170
- observation: aggregates in chains
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31170 | 16449 | alanine | + | carbon source |
| 31170 | 22599 | arabinose | + | carbon source |
| 31170 | 22653 | asparagine | + | carbon source |
| 31170 | 28757 | fructose | + | carbon source |
| 31170 | 28260 | galactose | + | carbon source |
| 31170 | 17234 | glucose | + | carbon source |
| 31170 | 15428 | glycine | + | carbon source |
| 31170 | 17716 | lactose | + | carbon source |
| 31170 | 25017 | leucine | + | carbon source |
| 31170 | 29864 | mannitol | + | carbon source |
| 31170 | 17268 | myo-inositol | + | carbon source |
| 31170 | 28044 | phenylalanine | + | carbon source |
| 31170 | 26546 | rhamnose | + | carbon source |
| 31170 | 33942 | ribose | + | carbon source |
| 31170 | 17992 | sucrose | + | carbon source |
| 31170 | 18222 | xylose | + | carbon source |
metabolite production
- @ref: 31170
- Chebi-ID: 16136
- metabolite: hydrogen sulfide
- production: yes
enzymes
- @ref: 31170
- value: urease
- activity: +
- ec: 3.5.1.5
Isolation, sampling and environmental information
isolation
- @ref: 23949
- sample type: soil
- geographic location: Yaan, Sichuan Province
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 23949
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 23949
- description: Streptomyces yaanensis 16S ribosomal RNA gene, partial sequence
- accession: JQ307192
- length: 1438
- database: ena
- NCBI tax ID: 1142239
GC content
| @ref | GC-content | method |
|---|---|---|
| 31170 | 68.7 | |
| 23949 | 68.7 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 23949
culture collection no.: DSM 102251, CGMCC 4.7035, KCTC 29111
straininfo link
- @ref: 90516
- straininfo: 407752
literature
- topic: Phylogeny
- Pubmed-ID: 23959832
- title: Streptomyces yaanensis sp. nov., isolated from soil.
- authors: Zheng J, Zhang X, Xin Y, Han X, Ni S, Zhang J
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.054734-0
- year: 2013
- mesh: Bacterial Typing Techniques, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 23949 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102251 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102251) | |||
| 31170 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27498 | 28776041 | |
| 90516 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407752.1 |