Strain identifier
BacDive ID: 132147
Type strain: 
Species: Mesorhizobium abyssinicae
Strain Designation: AC98c
Strain history: <- LMG; LMG 26967 <- A. Willems {2012} <- E. Wolde-meskel; AC98c {2000}
NCBI tax ID(s): 1209958 (species)
version 8.1 (current version)
General
@ref: 23937
BacDive-ID: 132147
DSM-Number: 29665
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, motile, rod-shaped
description: Mesorhizobium abyssinicae AC98c is a mesophilic, Gram-negative, motile bacterium that was isolated from root nodule Acacia abyssinica.
NCBI tax id
- NCBI tax id: 1209958
- Matching level: species
strain history
- @ref: 23937
- history: <- LMG; LMG 26967 <- A. Willems {2012} <- E. Wolde-meskel; AC98c {2000}
doi: 10.13145/bacdive132147.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Phyllobacteriaceae
- genus: Mesorhizobium
- species: Mesorhizobium abyssinicae
- full scientific name: Mesorhizobium abyssinicae Degefu et al. 2013
@ref: 23937
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Phyllobacteriaceae
genus: Mesorhizobium
species: Mesorhizobium abyssinicae
full scientific name: Mesorhizobium abyssinicae Degefu et al. 2013
strain designation: AC98c
type strain: yes
Morphology
cell morphology
- @ref: 30772
- gram stain: negative
- cell length: 2.61 µm
- cell width: 0.33 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 30772
- production: yes
Culture and growth conditions
culture medium
- @ref: 23937
- name: RHIZOBIUM MEDIUM (DSMZ Medium 98)
- growth: yes
- link: https://mediadive.dsmz.de/medium/98
- composition: Name: RHIZOBIUM MEDIUM (DSMZ Medium 98) Composition: air-dried garden soil 80.0 g/l Agar 15.0 g/l Mannitol 10.0 g/l Yeast extract 1.0 g/l Na2CO3 0.2 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 23937 | positive | growth | 30 | mesophilic |
| 30772 | positive | growth | 0-35 |
culture pH
- @ref: 30772
- ability: positive
- type: growth
- pH: 4.5-9
- PH range: alkaliphile
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30772 | 15740 | formate | + | carbon source |
| 30772 | 15792 | malonate | + | carbon source |
| 30772 | 17272 | propionate | + | carbon source |
| 30772 | 17148 | putrescine | + | carbon source |
| 30772 | 17822 | serine | + | carbon source |
Isolation, sampling and environmental information
isolation
- @ref: 23937
- sample type: root nodule Acacia abyssinica
- host species: Acacia abyssinica
- geographic location: Wondogenet
- country: Ethiopia
- origin.country: ETH
- continent: Africa
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Tree |
| #Host Body-Site | #Plant | #Root nodule |
taxonmaps
- @ref: 69479
- File name: preview.99_315.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_220;97_239;98_268;99_315&stattab=map
- Last taxonomy: Mesorhizobium
- 16S sequence: GQ847896
- Sequence Identity:
- Total samples: 49047
- soil counts: 28701
- aquatic counts: 8865
- animal counts: 7451
- plant counts: 4030
Safety information
risk assessment
- @ref: 23937
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 23937
- description: Mesorhizobium abyssinicae strain AC98c 16S ribosomal RNA gene, partial sequence
- accession: GQ847896
- length: 1468
- database: ena
- NCBI tax ID: 1209958
Genome sequences
- @ref: 66792
- description: Mesorhizobium abyssinicae DSM 29665
- accession: 2928199739
- assembly level: draft
- database: img
- NCBI tax ID: 1209958
GC content
- @ref: 23937
- GC-content: 63.5
External links
@ref: 23937
culture collection no.: DSM 29665, HAMBI 3306, LMG 26967
straininfo link
- @ref: 90503
- straininfo: 379940
literature
- topic: Phylogeny
- Pubmed-ID: 22941297
- title: Mesorhizobium shonense sp. nov., Mesorhizobium hawassense sp. nov. and Mesorhizobium abyssinicae sp. nov., isolated from root nodules of different agroforestry legume trees.
- authors: Degefu T, Wolde-Meskel E, Liu B, Cleenwerck I, Willems A, Frostegard A
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.044032-0
- year: 2012
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Ethiopia, Fabaceae/*microbiology, Fatty Acids/analysis, Genes, Bacterial, Mesorhizobium/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/*microbiology, Sequence Analysis, DNA
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 23937 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29665 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29665) | |||
| 30772 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27103 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 90503 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID379940.1 |