Strain identifier
BacDive ID: 132135
Type strain: 
Species: Glycomyces halotolerans
Strain history: <- TW Guan, Tarim Univ., China
NCBI tax ID(s): 942029 (species)
version 8.1 (current version)
General
@ref: 23925
BacDive-ID: 132135
DSM-Number: 103497
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive
description: Glycomyces halotolerans DSM 103497 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from soil sample.
NCBI tax id
- NCBI tax id: 942029
- Matching level: species
strain history
| @ref | history |
|---|---|
| 23925 | <- KCTC; KCTC 19988 |
| 67770 | KCTC 19988 <-- T.-W. Guan; Tarim Univ., China; TRM 40137. |
| 67771 | <- TW Guan, Tarim Univ., China |
doi: 10.13145/bacdive132135.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Glycomycetales
- family: Glycomycetaceae
- genus: Glycomyces
- species: Glycomyces halotolerans
- full scientific name: Glycomyces halotolerans Guan et al. 2012
@ref: 23925
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Glycomycetaceae
genus: Glycomyces
species: Glycomyces halotolerans
full scientific name: Glycomyces halotolerans Guan et al. 2012
type strain: yes
Morphology
cell morphology
- @ref: 67771
- gram stain: positive
multimedia
- @ref: 23925
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_103497.jpg
- caption: Medium 535 37°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 23925
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 23925 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
| 67771 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
observation
- @ref: 67770
- observation: quinones: MK-10(H2), MK-11, MK-9(H4)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 23925 | soil sample | Lop Nur salt lake, Xinjiang | China | CHN | Asia | 39.7053 | 89.9139 |
| 67770 | Hypersaline soil from the Lop Nur salt lake | Xinjiang Province, north-west China | China | CHN | Asia | ||
| 67771 | From saline soil | China | CHN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_97343.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_344;96_25554;97_50628;98_66692;99_97343&stattab=map
- Last taxonomy: Glycomyces halotolerans subclade
- 16S sequence: HQ651156
- Sequence Identity:
- Total samples: 17
- soil counts: 11
- aquatic counts: 1
- animal counts: 5
Safety information
risk assessment
- @ref: 23925
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 23925
- description: Glycomyces halotolerans strain TRM 40137 16S ribosomal RNA gene, partial sequence
- accession: HQ651156
- length: 1431
- database: ena
- NCBI tax ID: 942029
GC content
- @ref: 23925
- GC-content: 68.8
- method: high performance liquid chromatography (HPLC)
External links
@ref: 23925
culture collection no.: DSM 103497, CCTCC AA 2010013, KCTC 19988, TRM 40137, JCM 31484
straininfo link
- @ref: 90491
- straininfo: 398727
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 21400121 | Glycomyces halotolerans sp. nov., a novel actinomycete isolated from a hypersaline habitat in Xinjiang, China. | Guan TW, Xia ZF, Xiao J, Wu N, Chen ZJ, Zhang LL, Zhang XP | Antonie Van Leeuwenhoek | 10.1007/s10482-011-9574-1 | 2011 | Actinobacteria/classification/genetics/*isolation & purification/*metabolism, Base Composition, China, DNA, Bacterial/genetics, *Ecosystem, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sodium Chloride/*metabolism, *Soil Microbiology | Metabolism |
| Phylogeny | 24776532 | Glycomyces fuscus sp. nov. and Glycomyces albus sp. nov., actinomycetes isolated from a hypersaline habitat. | Han XX, Luo XX, Zhang LL | Int J Syst Evol Microbiol | 10.1099/ijs.0.061788-0 | 2014 | Actinomyces/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 28573482 | Glycomyces xinjiangensis sp. nov., a novel actinomycete isolated from a hypersaline habitat. | Guan TW, Xiang HP, Wang PH, Tian L, Tang SK, Zhao SX, Zhang XC | Arch Microbiol | 10.1007/s00203-017-1392-z | 2017 | *Actinomycetales/classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition/genetics, China, DNA, Bacterial/*genetics, Ecosystem, Fatty Acids/analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/analysis, Vitamin K 2/analysis | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23925 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103497 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103497) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 90491 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398727.1 |