Strain identifier
BacDive ID: 132128
Type strain: 
Species: Hoministercoradaptatus ammoniilyticus
Strain Designation: Sanger_32
Strain history: <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; Sanger_32
NCBI tax ID(s): 1955243 (species)
General
@ref: 23918
BacDive-ID: 132128
DSM-Number: 102174
keywords: genome sequence, Bacteria, mesophilic
description: Hoministercoradaptatus ammoniilyticus Sanger_32 is a mesophilic bacterium that was isolated from faeces from healthy human.
NCBI tax id
- NCBI tax id: 1955243
- Matching level: species
strain history
- @ref: 23918
- history: <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; Sanger_32
doi: 10.13145/bacdive132128.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Lachnospiraceae
- genus: Hoministercoradaptatus
- species: Hoministercoradaptatus ammoniilyticus
- full scientific name: Hoministercoradaptatus ammoniilyticus Hitch et al. 2022
@ref: 23918
domain: Bacteria
phylum: Bacillota
class: Clostridia
order: Eubacteriales
family: Lachnospiraceae
genus: Hoministercoradaptatus
species: Hoministercoradaptatus ammoniilyticus
full scientific name: Hoministercoradaptatus ammoniilyticus Hitch et al. 2022
strain designation: Sanger_32
type strain: yes
Culture and growth conditions
culture medium
- @ref: 23918
- name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)
- growth: yes
- link: https://mediadive.dsmz.de/medium/339
- composition: Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
- @ref: 23918
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23918
- sample type: faeces from healthy human
- geographic location: Cambridgeshire
- country: United Kingdom
- origin.country: GBR
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Sequence information
Genome sequences
- @ref: 66792
- description: Hoministercoradaptatus ammoniilyticus Sanger_32
- accession: GCA_025567245
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 2981727
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 92.756 | no |
| flagellated | no | 94.223 | no |
| gram-positive | yes | 93.278 | no |
| anaerobic | yes | 99.576 | no |
| aerobic | no | 98.151 | no |
| halophile | no | 82.148 | no |
| spore-forming | no | 54.543 | no |
| glucose-ferment | yes | 72.942 | no |
| thermophile | no | 98.779 | yes |
| glucose-util | yes | 84.622 | no |
External links
@ref: 23918
culture collection no.: DSM 102174, JCM 34804
straininfo link
- @ref: 90484
- straininfo: 403741
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23918 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102174 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102174) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 90484 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403741.1 |