Strain identifier
BacDive ID: 132110
Type strain: 
Species: Actinoallomurus caesius
Strain Designation: A3015
Strain history: <- T Tamura, NBRC, Japan
NCBI tax ID(s): 478115 (species)
version 8.1 (current version)
General
@ref: 23900
BacDive-ID: 132110
DSM-Number: 45445
keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, rod-shaped
description: Actinoallomurus caesius A3015 is an aerobe, spore-forming, mesophilic bacterium that was isolated from mangrove forest soil.
NCBI tax id
- NCBI tax id: 478115
- Matching level: species
strain history
| @ref | history |
|---|---|
| 23900 | <- NBRC; NBCR 103678 <- T. Tamura; A3015 |
| 67771 | <- T Tamura, NBRC, Japan |
doi: 10.13145/bacdive132110.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Streptosporangiales
- family: Thermomonosporaceae
- genus: Actinoallomurus
- species: Actinoallomurus caesius
- full scientific name: Actinoallomurus caesius Tamura et al. 2009
@ref: 23900
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Thermomonosporaceae
genus: Actinoallomurus
species: Actinoallomurus caesius
full scientific name: Actinoallomurus caesius Tamura et al. 2009
strain designation: A3015
type strain: yes
Morphology
cell morphology
| @ref | cell length | cell width | cell shape | motility | gram stain |
|---|---|---|---|---|---|
| 29127 | 1.15 µm | 0.9 µm | rod-shaped | no | |
| 67771 | positive |
pigmentation
- @ref: 29127
- production: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 23900 | GPHF-MEDIUM (DSMZ Medium 553) | yes | https://mediadive.dsmz.de/medium/553 | Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water |
| 23900 | ISP2 MEDIUM (DSMZ Medium 987) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium987.pdf |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 23900 | positive | growth | 28 | mesophilic |
| 29127 | positive | growth | 20-37 | |
| 29127 | positive | optimum | 28.5 | mesophilic |
| 67771 | positive | growth | 28 | mesophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 29127 | positive | growth | 5.0-7.0 |
| 29127 | positive | optimum | 6 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 29127 | aerobe |
| 67771 | aerobe |
spore formation
- @ref: 29127
- spore formation: yes
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 29127 | NaCl | positive | growth | 0-2 % |
| 29127 | NaCl | positive | optimum | 1 % |
observation
- @ref: 29127
- observation: aggregates in chains
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29127 | 16808 | 2-dehydro-D-gluconate | + | carbon source |
| 29127 | 15963 | ribitol | + | carbon source |
| 29127 | 16947 | citrate | + | carbon source |
| 29127 | 28757 | fructose | + | carbon source |
| 29127 | 28260 | galactose | + | carbon source |
| 29127 | 5417 | glucosamine | + | carbon source |
| 29127 | 17234 | glucose | + | carbon source |
| 29127 | 17754 | glycerol | + | carbon source |
| 29127 | 25017 | leucine | + | carbon source |
| 29127 | 17306 | maltose | + | carbon source |
| 29127 | 29864 | mannitol | + | carbon source |
| 29127 | 37684 | mannose | + | carbon source |
| 29127 | 16634 | raffinose | + | carbon source |
| 29127 | 26546 | rhamnose | + | carbon source |
| 29127 | 33942 | ribose | + | carbon source |
| 29127 | 27082 | trehalose | + | carbon source |
| 29127 | 4853 | esculin | + | hydrolysis |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 29127 | acid phosphatase | + | 3.1.3.2 |
| 29127 | alkaline phosphatase | + | 3.1.3.1 |
| 29127 | catalase | + | 1.11.1.6 |
| 29127 | gelatinase | + |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 23900 | mangrove forest soil | Iriomote Island, Okinawa | Japan | JPN | Asia |
| 67771 | From mangrove forest soil | Iriomote Island, Okinawa | Japan | JPN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Mangrove |
| #Environmental | #Terrestrial | #Forest |
| #Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_39292.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_239;96_5383;97_10607;98_13006;99_39292&stattab=map
- Last taxonomy: Actinoallomurus
- 16S sequence: AB364589
- Sequence Identity:
- Total samples: 1336
- soil counts: 1187
- aquatic counts: 70
- animal counts: 33
- plant counts: 46
Safety information
risk assessment
- @ref: 23900
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 23900
- description: Actinoallomurus caesius gene for 16S rRNA, partial sequence, strain: A3015 (= NBRC 103678)
- accession: AB364589
- length: 1465
- database: ena
- NCBI tax ID: 478115
GC content
- @ref: 23900
- GC-content: 71
External links
@ref: 23900
culture collection no.: DSM 45445, KCTC 19535, NBCR 103678, NBRC 103678
straininfo link
- @ref: 90466
- straininfo: 400361
literature
- topic: Phylogeny
- Pubmed-ID: 19567582
- title: Transfer of Actinomadura spadix Nonomura and Ohara 1971 to Actinoallomurus spadix gen. nov., comb. nov., and description of Actinoallomurus amamiensis sp. nov., Actinoallomurus caesius sp. nov., Actinoallomurus coprocola sp. nov., Actinoallomurus fulvus sp. nov., Actinoallomurus iriomotensis sp. nov., Actinoallomurus luridus sp. nov., Actinoallomurus purpureus sp. nov. and Actinoallomurus yoronensis sp. nov.
- authors: Tamura T, Ishida Y, Nozawa Y, Otoguro M, Suzuki K
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.006858-0
- year: 2009
- mesh: Actinomycetales/chemistry/*classification/genetics/*isolation & purification, Amino Acids/analysis, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Japan, Molecular Sequence Data, Peptidoglycan/chemistry, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial/cytology
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 23900 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45445 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45445) | |||
| 29127 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 25553 | 28776041 | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 90466 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400361.1 |