Strain identifier
BacDive ID: 13211
Type strain:
Species: Actinosynnema mirum
Strain Designation: 101
Strain history: KCC A-0225 <-- IMRU 3971 <-- T. Hasegawa 101.
NCBI tax ID(s): 446462 (strain), 40567 (species)
General
@ref: 11298
BacDive-ID: 13211
DSM-Number: 43827
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive, filament-shaped
description: Actinosynnema mirum 101 is a spore-forming, mesophilic, Gram-positive bacterium that builds an aerial mycelium and was isolated from grass blade.
NCBI tax id
NCBI tax id | Matching level |
---|---|
446462 | strain |
40567 | species |
strain history
@ref | history |
---|---|
11298 | <- IMRU <- T. Hasegawa, 101 |
67770 | KCC A-0225 <-- IMRU 3971 <-- T. Hasegawa 101. |
doi: 10.13145/bacdive13211.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Actinosynnema
- species: Actinosynnema mirum
- full scientific name: Actinosynnema mirum Hasegawa et al. 1978 (Approved Lists 1980)
@ref: 11298
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Actinosynnema
species: Actinosynnema mirum
full scientific name: Actinosynnema mirum Hasegawa et al. 1978 emend. Nouioui et al. 2018
strain designation: 101
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell shape | motility | confidence |
---|---|---|---|---|
43417 | positive | filament-shaped | no | |
69480 | positive | 100 |
colony morphology
@ref | colony color | incubation period | medium used | colony shape |
---|---|---|---|---|
19599 | Dahlia yellow | 10-14 days | ISP 2 | |
19599 | Beige | 10-14 days | ISP 3 | |
19599 | Beige | 10-14 days | ISP 4 | |
19599 | Beige | 10-14 days | ISP 5 | |
19599 | Beige | 10-14 days | ISP 6 | |
19599 | Beige | 10-14 days | ISP 7 | |
43417 | white to yellowish orange | filamentous |
multicellular morphology
@ref | forms multicellular complex | medium name | complex name | complex color | further description |
---|---|---|---|---|---|
19599 | no | ISP 2 | |||
19599 | yes | ISP 3 | Aerial Mycelium | White | |
19599 | yes | ISP 4 | Aerial Mycelium | White | |
19599 | yes | ISP 5 | Aerial Mycelium | White | |
19599 | no | ISP 6 | |||
19599 | yes | ISP 7 | Aerial Mycelium | White | |
43417 | yes | substrate mycelium | yellowish orange | consisting of long, branching hyphae | |
43417 | yes | substrate mycelium | orange | ||
43417 | yes | synnemata | compacted groups of hyphae which bear conidia | ||
43417 | yes | conidia |
multimedia
@ref | multimedia content | intellectual property rights | caption |
---|---|---|---|
11298 | https://www.dsmz.de/microorganisms/photos/DSM_43827-1.jpg | © Leibniz-Institut DSMZ | |
11298 | https://www.dsmz.de/microorganisms/photos/DSM_43827.jpg | © Leibniz-Institut DSMZ | Medium 65 28°C |
66793 | EM_DSM_43827_1.jpg | © HZI/Manfred Rohde | electron microscopic image |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
11298 | N-Z-AMINE-MEDIUM (DSMZ Medium 554) | yes | https://mediadive.dsmz.de/medium/554 | Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water |
11298 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
19599 | ISP 2 | yes | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |
19599 | ISP 3 | yes | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |
19599 | ISP 4 | yes | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |
19599 | ISP 5 | yes | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |
19599 | ISP 6 | yes | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
19599 | ISP 7 | yes | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
19599 | positive | optimum | 28 | mesophilic |
11298 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
@ref | type of spore | spore formation | confidence |
---|---|---|---|
43417 | zoospore | yes | |
69481 | yes | 100 | |
69480 | yes | 100 |
compound production
- @ref: 11298
- compound: nocardicin A
halophily
- @ref: 19599
- salt: NaCl
- growth: positive
- tested relation: maximum
- concentration: 5 %
observation
@ref | observation |
---|---|
43417 | Production of nocardicin-type antibiotics |
43417 | inhibition of growth of Bacillus megaterium, Sarcina lutea, Mycobacterium smegmatis, Aspergillus niger, Penicillum notatum, Saccharomyces cerevisiae, Candida tropicalis |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
19599 | 17234 | glucose | + | |
19599 | 22599 | arabinose | - | |
19599 | 17992 | sucrose | +/- | |
19599 | 18222 | xylose | - | |
19599 | 17268 | myo-inositol | - | |
19599 | 29864 | mannitol | - | |
19599 | 28757 | fructose | + | |
19599 | 26546 | rhamnose | + | |
19599 | 16634 | raffinose | + | |
19599 | 62968 | cellulose | - | |
43413 | 62968 | cellulose | + | degradation |
43417 | 30089 | acetate | - | assimilation |
43417 | 16708 | adenine | - | hydrolysis |
43417 | 15963 | ribitol | + | builds acid from |
43417 | 16150 | benzoate | - | assimilation |
43417 | casein | + | hydrolysis | |
43417 | 17057 | cellobiose | + | builds acid from |
43417 | 16947 | citrate | - | assimilation |
43417 | 16899 | D-mannitol | + | builds acid from |
43417 | 16024 | D-mannose | + | builds acid from |
43417 | 28053 | melibiose | + | builds acid from |
43417 | 16988 | D-ribose | - | builds acid from |
43417 | 23652 | dextrin | + | builds acid from |
43417 | 16813 | galactitol | - | builds acid from |
43417 | 17113 | erythritol | - | builds acid from |
43417 | 28757 | fructose | + | builds acid from |
43417 | 28260 | galactose | + | builds acid from |
43417 | 5291 | gelatin | + | hydrolysis |
43417 | 17234 | glucose | + | builds acid from |
43417 | 17754 | glycerol | - | builds acid from |
43417 | 28087 | glycogen | + | builds acid from |
43417 | 17368 | hypoxanthine | - | hydrolysis |
43417 | 17268 | myo-inositol | - | builds acid from |
43417 | 15443 | inulin | - | builds acid from |
43417 | 30849 | L-arabinose | + | builds acid from |
43417 | 62345 | L-rhamnose | + | builds acid from |
43417 | 24996 | lactate | + | assimilation |
43417 | 17716 | lactose | + | builds acid from |
43417 | 25115 | malate | + | assimilation |
43417 | 17306 | maltose | + | builds acid from |
43417 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
43417 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
43417 | 15361 | pyruvate | + | assimilation |
43417 | 16634 | raffinose | + | builds acid from |
43417 | 17814 | salicin | - | builds acid from |
43417 | 30911 | sorbitol | - | builds acid from |
43417 | 28017 | starch | + | hydrolysis |
43417 | 28017 | starch | + | builds acid from |
43417 | 30031 | succinate | - | assimilation |
43417 | 17992 | sucrose | + | builds acid from |
43417 | 30929 | tartrate | + | assimilation |
43417 | 27082 | trehalose | + | builds acid from |
43417 | 18186 | tyrosine | + | hydrolysis |
43417 | 16199 | urea | - | hydrolysis |
43417 | 15318 | xanthine | - | hydrolysis |
43417 | 18222 | xylose | + | builds acid from |
68369 | 25115 | malate | + | assimilation |
68369 | 27689 | decanoate | - | assimilation |
68369 | 24265 | gluconate | + | assimilation |
68369 | 17306 | maltose | + | assimilation |
68369 | 59640 | N-acetylglucosamine | + | assimilation |
68369 | 16899 | D-mannitol | + | assimilation |
68369 | 16024 | D-mannose | + | assimilation |
68369 | 30849 | L-arabinose | + | assimilation |
68369 | 17634 | D-glucose | + | assimilation |
68369 | 5291 | gelatin | + | hydrolysis |
68369 | 4853 | esculin | + | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | + | reduction |
68368 | 5291 | gelatin | + | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | + | hydrolysis |
68368 | 16947 | citrate | + | assimilation |
68368 | 18257 | ornithine | + | degradation |
68368 | 25094 | lysine | + | degradation |
68368 | 29016 | arginine | + | hydrolysis |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68369 | 35581 | indole | no |
68368 | 15688 | acetoin | no |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
metabolite tests
@ref | Chebi-ID | metabolite | indole test | voges-proskauer-test |
---|---|---|---|---|
68369 | 35581 | indole | - | |
68368 | 15688 | acetoin | - | |
68368 | 35581 | indole | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
43417 | nitrate reductase | + | 1.7.99.4 |
43417 | phosphatase | + | |
68369 | gelatinase | + | |
68369 | beta-glucosidase | + | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
68368 | gelatinase | + | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | + | 3.5.1.5 |
68368 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | lysine decarboxylase | + | 4.1.1.18 |
68368 | arginine dihydrolase | + | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | alpha-galactosidase | + | 3.2.1.22 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase | Control |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
19599 | + | + | + | - | + | + | + | + | + | + | + | + | + | + | + | + | + | - | - | |
11298 | +/- | - | - | - | + | - | - | - | - | - | - | + | + | - | +/- | + | + | - | - | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL |
---|---|---|---|---|---|---|---|---|---|---|---|
19599 | + | + | + | + | + | - | + | - | - | - | + |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
11298 | + | - | - | - | - | + | + | + | + | + | + | + | + | + | + | - | +/- | + | +/- | +/- |
Isolation, sampling and environmental information
isolation
@ref | sample type | sampling date | geographic location | country | origin.country | continent | latitude | longitude |
---|---|---|---|---|---|---|---|---|
11298 | grass blade | |||||||
43417 | grass blade near raritan River | 1976-09 | New Jersey | USA | USA | North America | 40 | -74 |
67770 | Grass blade | Raritan River, NJ | USA | USA | North America |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Industrial | #Engineered product |
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
11298 | 1 | Risk group (German classification) |
19599 | 1 | Risk group (German classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Actinosynnema mirum 16S ribosomal RNA gene, partial sequence | AF328679 | 1509 | ena | 446462 |
20218 | Actinosynnema mirum gene for 16S ribosomal RNA, partial sequence | D85475 | 1466 | ena | 40567 |
20218 | Actinosynnema mirum clone 1 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | DQ459055 | 418 | ena | 446462 |
20218 | Actinosynnema mirum clone 2 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | DQ459056 | 415 | ena | 446462 |
20218 | Actinosynnema mirum clone 3 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | DQ459057 | 413 | ena | 446462 |
20218 | Actinosynnema mirum clone 6 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | DQ459058 | 413 | ena | 446462 |
20218 | Actinosynnema mirum clone 8 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | DQ459059 | 414 | ena | 446462 |
20218 | Actinosynnema mirum clone 9 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | DQ459060 | 413 | ena | 446462 |
20218 | Actinosynnema mirum clone 13 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | DQ459065 | 418 | ena | 446462 |
20218 | Actinosynnema mirum 16S rRNA gene, strain DSM 43827T | X84447 | 1460 | ena | 446462 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Actinosynnema mirum DSM 43827 | GCA_000023245 | complete | ncbi | 446462 |
66792 | Actinosynnema mirum DSM 43827 | 446462.6 | complete | patric | 446462 |
66792 | Actinosynnema mirum DSM 43827 | 644736323 | draft | img | 446462 |
GC content
- @ref: 67770
- GC-content: 73.71
- method: genome sequence analysis
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
motile | yes | 64.848 | no |
flagellated | no | 88.027 | no |
gram-positive | yes | 87.154 | no |
anaerobic | no | 98.769 | no |
aerobic | yes | 91.106 | no |
halophile | no | 92.829 | no |
spore-forming | yes | 94.347 | no |
thermophile | no | 97.874 | yes |
glucose-util | yes | 89.736 | yes |
glucose-ferment | no | 90.223 | yes |
External links
@ref: 11298
culture collection no.: DSM 43827, ATCC 29888, IAM 14280, IFO 14064, IMET 9740, IMRU 3971, JCM 3225, KCC A-0225, NBRC 14064, BCRC 13449, IMSNU 20048, KCTC 9125, KCTC 9184, NCIMB 13271, NRRL B-12336, VKM Ac-843
straininfo link
- @ref: 82419
- straininfo: 39788
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Metabolism | 23939727 | Comparative metabolomic analysis of an alternative biosynthetic pathway to pseudosugars in Actinosynnema mirum DSM 43827. | Asamizu S, Abugreen M, Mahmud T | Chembiochem | 10.1002/cbic.201300384 | 2013 | Actinomycetales/enzymology/*metabolism, Carbasugars/chemistry/*metabolism, Glycosyltransferases/metabolism, *Metabolome, Metabolomics, Molecular Conformation | Enzymology |
Metabolism | 24907338 | Discovery of gene cluster for mycosporine-like amino acid biosynthesis from Actinomycetales microorganisms and production of a novel mycosporine-like amino acid by heterologous expression. | Miyamoto KT, Komatsu M, Ikeda H | Appl Environ Microbiol | 10.1128/AEM.00727-14 | 2014 | Actinomycetales/*genetics/metabolism, Amino Acids/*biosynthesis, Bacterial Proteins/*genetics/metabolism, Cyclohexanones, Cyclohexylamines, *Gene Expression, Glycine/*analogs & derivatives/biosynthesis, *Multigene Family, Streptomyces/genetics/*metabolism | Biotechnology |
Genetics | 26484057 | Genome sequencing and annotation of Amycolatopsis vancoresmycina strain DSM 44592(T). | Kaur N, Kumar S, Mayilraj S | Genom Data | 10.1016/j.gdata.2013.10.006 | 2013 | ||
Metabolism | 28539332 | Identification and characterization of two types of amino acid-regulated acetyltransferases in actinobacteria. | Lu YX, Liu XX, Liu WB, Ye BC | Biosci Rep | 10.1042/BSR20170157 | 2017 | Acetyltransferases/genetics/*metabolism, Asparagine/genetics/*metabolism, Bacterial Proteins/genetics/*metabolism, Cysteine/genetics/*metabolism, Protein Processing, Post-Translational/*physiology, Streptomyces/*enzymology/genetics | Enzymology |
29301868 | Protein acetylation: an important mechanism in actinobacteria. | Zhang H, Xu X | Biosci Rep | 10.1042/BSR20170851 | 2018 | Acetylation, *Actinobacteria, Amino Acid Sequence, Cysteine/genetics, Lysine, *Protein Processing, Post-Translational | ||
Biotechnology | 29558858 | Metabolic engineering of Corynebacterium glutamicum for production of sunscreen shinorine. | Tsuge Y, Kawaguchi H, Yamamoto S, Nishigami Y, Sota M, Ogino C, Kondo A | Biosci Biotechnol Biochem | 10.1080/09168451.2018.1452602 | 2018 | Actinobacteria/genetics, Corynebacterium glutamicum/genetics/*metabolism, Cyclohexylamines/*chemical synthesis, Genes, Bacterial, Glycine/*analogs & derivatives/chemical synthesis, Mass Spectrometry, *Metabolic Engineering, Pentose Phosphate Pathway, Phosphogluconate Dehydrogenase/metabolism, Recombination, Genetic, Sugar Phosphates/chemistry, Sunscreening Agents/*chemical synthesis, Transaldolase/genetics, Ultraviolet Rays | Metabolism |
Phylogeny | 29863068 | Mirilactams C-E, Novel Polycyclic Macrolactams Isolated from Combined-Culture of Actinosynnema mirum NBRC 14064 and Mycolic Acid-Containing Bacterium. | Hoshino S, Ozeki M, Wong CP, Zhang H, Hayashi F, Awakawa T, Morita H, Onaka H, Abe I | Chem Pharm Bull (Tokyo) | 10.1248/cpb.c18-00143 | 2018 | Actinobacteria/*chemistry, Actinomycetales/*chemistry, Lactams, Macrocyclic/chemistry/*isolation & purification, Molecular Conformation, Mycolic Acids/*chemistry | Enzymology |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
11298 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43827) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43827 | |||
19599 | Wink, J. | http://www.dsmz.de/microorganisms/wink_pdf/DSM43827.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
43413 | Iain Anderson, Birte Abt, Athanasios Lykidis, Hans-Peter Klenk, Nikos Kyrpides, Natalia Ivanova | 10.1371/journal.pone.0039331 | Genomics of Aerobic Cellulose Utilization Systems in Actinobacteria | PLoS ONE 7: - 2012 | 22723998 | |
43417 | Miriam Land, Alla Lapidus, Shanmugam Mayilraj, Feng Chen, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Susan Lucas, Hope Tice, Jan-Fang Cheng, Olga Chertkov, David Bruce, Lynne Goodwin, Sam Pitluck, Manfred Rohde, Markus Göker, Amrita Pati, Natalia Ivanova, Konstantinos Mavromatis, Amy Chen, Krishna Palaniappan, Loren Hauser, Yun-Juan Chang, Cynthia C. Jeffries, Thomas Brettin, John C. Detter, Cliff Han, Patrick Chain, Brian J. Tindall, Jim Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides and Hans-Peter Klenk | 10.4056/sigs.21137 | Complete genome sequence of Actinosynnema mirum type strain (101) | Stand Genomic Sci 1: 46-53 2009 | 21304636 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 35: 676-683 2017 | 28604660 | |
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68368 | Automatically annotated from API 20E | |||||
68369 | Automatically annotated from API 20NE | |||||
68382 | Automatically annotated from API zym | |||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
82419 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID39788.1 | StrainInfo: A central database for resolving microbial strain identifiers |