Strain identifier

BacDive ID: 13210

Type strain: Yes

Species: Actinokineospora soli

Strain history: S.-K. Tang YIM 75948.

NCBI tax ID(s): 1048753 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 17765

BacDive-ID: 13210

DSM-Number: 45613

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive

description: Actinokineospora soli DSM 45613 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 1048753
  • Matching level: species

strain history

@refhistory
17765<- S.-K. Tang, YIM; YIM 75948
67770S.-K. Tang YIM 75948.

doi: 10.13145/bacdive13210.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Actinokineospora
  • species: Actinokineospora soli
  • full scientific name: Actinokineospora soli Tang et al. 2012

@ref: 17765

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Actinokineospora

species: Actinokineospora soli

full scientific name: Actinokineospora soli Tang et al. 2012

type strain: yes

Morphology

cell morphology

  • @ref: 30427
  • gram stain: positive
  • motility: no

pigmentation

  • @ref: 30427
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 17765
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
17765positivegrowth28mesophilic
30427positivegrowth25-55
30427positiveoptimum37mesophilic
67770positivegrowth37mesophilic

culture pH

@refabilitytypepHPH range
30427positivegrowth07-09alkaliphile
30427positiveoptimum8

Physiology and metabolism

oxygen tolerance

  • @ref: 30427
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30427
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
30427NaClpositivegrowth0-5 %
30427NaClpositiveoptimum1 %

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3042717057cellobiose+carbon source
3042728260galactose+carbon source
3042717234glucose+carbon source
3042717306maltose+carbon source
3042729864mannitol+carbon source
3042737684mannose+carbon source
3042717992sucrose+carbon source
3042717151xylitol+carbon source

enzymes

@refvalueactivityec
30427catalase+1.11.1.6
30427gelatinase+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
17765soilYunnan provinceChinaCHNAsia
67770SoilYunnan ProvinceChinaCHNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_15069.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_394;97_640;98_11399;99_15069&stattab=map
  • Last taxonomy: Actinokineospora
  • 16S sequence: JN188939
  • Sequence Identity:
  • Total samples: 60
  • soil counts: 19
  • aquatic counts: 2
  • animal counts: 24
  • plant counts: 15

Safety information

risk assessment

  • @ref: 17765
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Actinokineospora soli strain YIM 75948 16S ribosomal RNA gene, partial sequenceJN1889391477ena1048753
17765Actinokineospora soli strain YIM 75948 16S ribosomal RNA gene, partial sequenceJN0057851477ena1048753

GC content

@refGC-contentmethod
1776573.8high performance liquid chromatography (HPLC)
3042773.8

External links

@ref: 17765

culture collection no.: DSM 45613, JCM 17695, YIM 75948, NBRC 111522

straininfo link

  • @ref: 82418
  • straininfo: 405621

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21984679Actinokineospora soli sp. nov., a thermotolerant actinomycete isolated from soil, and emended description of the genus Actinokineospora.Tang X, Zhou Y, Zhang J, Ming H, Nie GX, Yang LL, Tang SK, Li WJInt J Syst Evol Microbiol10.1099/ijs.0.035832-02011Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Phospholipids/analysis, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil/analysis, *Soil MicrobiologyGenetics
Phylogeny26410559Actinokineospora guangxiensis sp. nov., isolated from soil.Wu H, Liu BInt J Syst Evol Microbiol10.1099/ijsem.0.0006272015Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny28820111Description of Actinokineospora acnipugnans sp. nov., an actinomycete isolated from soil, showing potential uses in cosmetics.Dahal RH, Shim DS, Kim JInt J Syst Evol Microbiol10.1099/ijsem.0.0020782017Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, Cosmetics, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, *Grassland, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
17765Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45613)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45613
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
30427Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604126763
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
82418Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID405621.1StrainInfo: A central database for resolving microbial strain identifiers