Strain identifier

BacDive ID: 132094

Type strain: Yes

Species: Lewinella lutea

Strain Designation: FYK2402M69

Strain history: <- NBRC <- Y. Fukunaga, NITE - Natl. Institute of Technology and Evaluation, Chiba, Japan

NCBI tax ID(s): 438752 (species)

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General

@ref: 23884

BacDive-ID: 132094

DSM-Number: 102254

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Lewinella lutea FYK2402M69 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from top shell of sea snail Nodilittorina trochoides.

NCBI tax id

  • NCBI tax id: 438752
  • Matching level: species

strain history

  • @ref: 23884
  • history: <- NBRC <- Y. Fukunaga, NITE - Natl. Institute of Technology and Evaluation, Chiba, Japan

doi: 10.13145/bacdive132094.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Saprospiria
  • order: Saprospirales
  • family: Lewinellaceae
  • genus: Lewinella
  • species: Lewinella lutea
  • full scientific name: Lewinella lutea Khan et al. 2007

  • synonyms

    • @ref: 20215
    • synonym: Neolewinella lutea

@ref: 23884

domain: Bacteria

phylum: Bacteroidetes

class: Saprospiria

order: Sphingobacteriales

family: Lewinellaceae

genus: Lewinella

species: Lewinella lutea

full scientific name: Lewinella lutea Khan et al. 2007

strain designation: FYK2402M69

type strain: yes

Morphology

cell morphology

  • @ref: 32322
  • gram stain: negative
  • cell length: 0.8 µm
  • cell width: 0.4 µm
  • cell shape: rod-shaped

pigmentation

  • @ref: 32322
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 23884
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
23884positivegrowth25mesophilic
32322positivegrowth10-35
32322positiveoptimum25mesophilic

culture pH

@refabilitytypepHPH range
32322positivegrowth6-10alkaliphile
32322positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 32322
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
32322NaClpositivegrowth02-05 %
32322NaClpositiveoptimum3.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3232217057cellobiose+carbon source
3232228757fructose+carbon source
3232233984fucose+carbon source
3232228260galactose+carbon source
3232217234glucose+carbon source
3232217716lactose+carbon source
3232217306maltose+carbon source
3232237684mannose+carbon source
3232228053melibiose+carbon source
32322506227N-acetylglucosamine+carbon source
3232216634raffinose+carbon source
3232226546rhamnose+carbon source
3232217814salicin+carbon source
3232217992sucrose+carbon source
3232227082trehalose+carbon source
3232253424tween 20+carbon source
3232253423tween 40+carbon source
3232253426tween 80+carbon source
3232218222xylose+carbon source

enzymes

@refvalueactivityec
32322catalase+1.11.1.6
32322gelatinase+
32322cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 23884
  • sample type: top shell of sea snail Nodilittorina trochoides
  • host species: Nodilittorina trochoides
  • geographic location: Pacific Coast, Mikurajima
  • country: Japan
  • origin.country: JPN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Host#Invertebrates (Other)#Mollusca
#Host Body-Site

taxonmaps

  • @ref: 69479
  • File name: preview.99_32503.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_489;96_15717;97_19260;98_24048;99_32503&stattab=map
  • Last taxonomy: Lewinella lutea subclade
  • 16S sequence: AB301494
  • Sequence Identity:
  • Total samples: 620
  • soil counts: 3
  • aquatic counts: 613
  • animal counts: 3
  • plant counts: 1

Safety information

risk assessment

  • @ref: 23884
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 23884
  • description: Lewinella lutea gene for 16S rRNA, partial sequence, strain: FYK2402M69
  • accession: AB301494
  • length: 1446
  • database: ena
  • NCBI tax ID: 438752

GC content

  • @ref: 32322
  • GC-content: 56

External links

@ref: 23884

culture collection no.: DSM 102254, NBRC 102634, NCIMB 14313

straininfo link

  • @ref: 90450
  • straininfo: 401090

literature

  • topic: Phylogeny
  • Pubmed-ID: 18048755
  • title: Emended descriptions of the genus Lewinella and of Lewinella cohaerens, Lewinella nigricans and Lewinella persica, and description of Lewinella lutea sp. nov. and Lewinella marina sp. nov.
  • authors: Khan ST, Fukunaga Y, Nakagawa Y, Harayama S
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.65308-0
  • year: 2007
  • mesh: Aerobiosis/physiology, Bacterial Typing Techniques, Bacteroidetes/chemistry/*classification/genetics/*isolation & purification, Carboxymethylcellulose Sodium/metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Geologic Sediments/*microbiology, Japan, Molecular Sequence Data, Organic Chemicals, Pacific Ocean, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Starch/metabolism
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23884Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102254Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102254)
32322Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172855828776041
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
90450Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401090.1